Hb_001247_090

Information

Type -
Description -
Location Contig1247: 49197-49556
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019963mg
description hypothetical protein
nr
ID XP_012088849.1
description PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23187 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_090 0.0 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
2 Hb_003216_140 0.0797238606 - - F-box protein SNE, putative [Ricinus communis]
3 Hb_002304_100 0.0833676986 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
4 Hb_189208_050 0.0837858111 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
5 Hb_000568_020 0.0879373077 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
6 Hb_000834_130 0.1009505599 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000152_590 0.107028498 - - PREDICTED: 21 kDa protein [Jatropha curcas]
8 Hb_001645_030 0.1078940788 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
9 Hb_000339_050 0.1091536775 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
10 Hb_000411_020 0.110025856 - - cytochrome P450, putative [Ricinus communis]
11 Hb_000243_340 0.1118642279 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
12 Hb_000310_110 0.1156520034 - - PREDICTED: probable trehalose-phosphate phosphatase F isoform X1 [Jatropha curcas]
13 Hb_009189_100 0.1157495162 - - PREDICTED: patellin-6 [Jatropha curcas]
14 Hb_000805_270 0.1157501356 - - PREDICTED: expansin-A4 [Gossypium raimondii]
15 Hb_027556_060 0.1163357314 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
16 Hb_024868_010 0.1174778666 - - protein kinase, putative [Ricinus communis]
17 Hb_010672_010 0.1175296747 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
18 Hb_006916_120 0.1176348193 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
19 Hb_000631_100 0.1185830664 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
20 Hb_004031_050 0.1198568509 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]

Gene co-expression network

sample Hb_001247_090 Hb_001247_090 Hb_003216_140 Hb_003216_140 Hb_001247_090--Hb_003216_140 Hb_002304_100 Hb_002304_100 Hb_001247_090--Hb_002304_100 Hb_189208_050 Hb_189208_050 Hb_001247_090--Hb_189208_050 Hb_000568_020 Hb_000568_020 Hb_001247_090--Hb_000568_020 Hb_000834_130 Hb_000834_130 Hb_001247_090--Hb_000834_130 Hb_000152_590 Hb_000152_590 Hb_001247_090--Hb_000152_590 Hb_003216_140--Hb_189208_050 Hb_024868_010 Hb_024868_010 Hb_003216_140--Hb_024868_010 Hb_000411_020 Hb_000411_020 Hb_003216_140--Hb_000411_020 Hb_000631_100 Hb_000631_100 Hb_003216_140--Hb_000631_100 Hb_027556_060 Hb_027556_060 Hb_003216_140--Hb_027556_060 Hb_000243_340 Hb_000243_340 Hb_002304_100--Hb_000243_340 Hb_001645_030 Hb_001645_030 Hb_002304_100--Hb_001645_030 Hb_002304_100--Hb_000568_020 Hb_000339_050 Hb_000339_050 Hb_002304_100--Hb_000339_050 Hb_002601_040 Hb_002601_040 Hb_002304_100--Hb_002601_040 Hb_189208_050--Hb_000411_020 Hb_189208_050--Hb_000631_100 Hb_002641_140 Hb_002641_140 Hb_189208_050--Hb_002641_140 Hb_189208_050--Hb_024868_010 Hb_000568_020--Hb_000834_130 Hb_000568_020--Hb_000243_340 Hb_005214_050 Hb_005214_050 Hb_000568_020--Hb_005214_050 Hb_004031_050 Hb_004031_050 Hb_000568_020--Hb_004031_050 Hb_000834_130--Hb_000243_340 Hb_000419_140 Hb_000419_140 Hb_000834_130--Hb_000419_140 Hb_000076_280 Hb_000076_280 Hb_000834_130--Hb_000076_280 Hb_000834_130--Hb_001645_030 Hb_000834_130--Hb_002304_100 Hb_010672_010 Hb_010672_010 Hb_000152_590--Hb_010672_010 Hb_001782_100 Hb_001782_100 Hb_000152_590--Hb_001782_100 Hb_133508_020 Hb_133508_020 Hb_000152_590--Hb_133508_020 Hb_006351_030 Hb_006351_030 Hb_000152_590--Hb_006351_030 Hb_006916_120 Hb_006916_120 Hb_000152_590--Hb_006916_120 Hb_146901_020 Hb_146901_020 Hb_000152_590--Hb_146901_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.428422 1.28562 2.63779 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.765261 0.326837

CAGE analysis