Hb_001247_100

Information

Type -
Description -
Location Contig1247: 54231-59080
Sequence    

Annotation

kegg
ID pop:POPTR_0013s00650g
description POPTRDRAFT_834444; pyrrolidone-carboxylate peptidase family protein
nr
ID XP_012088846.1
description PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
swissprot
ID Q9K6U4
description Pyrrolidone-carboxylate peptidase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=pcp PE=3 SV=1
trembl
ID V7D1A1
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G223200g PE=4 SV=1
Gene Ontology
ID GO:0005829
description peptidase pyroglutamyl peptidase i-like isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07474: 55399-59024 , PASA_asmbl_07475: 55685-59024
cDNA
(Sanger)
(ID:Location)		 040_A16.ab1: 55399-58625 , 041_J09.ab1: 55724-58649 , 044_F15.ab1: 55397-58663

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_100 0.0 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
2 Hb_000987_070 0.0805054894 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
3 Hb_003502_060 0.0834557356 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
4 Hb_004052_050 0.0836453631 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
5 Hb_000005_080 0.0845707914 - - PREDICTED: cyclin-dependent kinases regulatory subunit 1 [Elaeis guineensis]
6 Hb_021068_040 0.0850031534 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
7 Hb_030736_080 0.0851018603 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000030_030 0.0879827897 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
9 Hb_001703_060 0.0887876438 - - protein kinase, putative [Ricinus communis]
10 Hb_000705_210 0.0900094448 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
11 Hb_000417_040 0.0924522279 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_172426_040 0.0925607935 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
13 Hb_003787_010 0.0927743157 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
14 Hb_000805_240 0.0930106155 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
15 Hb_018124_010 0.0938808004 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
16 Hb_000000_460 0.0940144667 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
17 Hb_152784_010 0.0950482713 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
18 Hb_003151_040 0.0954695535 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
19 Hb_005846_040 0.0959640998 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
20 Hb_001057_040 0.0966860889 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]

Gene co-expression network

sample Hb_001247_100 Hb_001247_100 Hb_000987_070 Hb_000987_070 Hb_001247_100--Hb_000987_070 Hb_003502_060 Hb_003502_060 Hb_001247_100--Hb_003502_060 Hb_004052_050 Hb_004052_050 Hb_001247_100--Hb_004052_050 Hb_000005_080 Hb_000005_080 Hb_001247_100--Hb_000005_080 Hb_021068_040 Hb_021068_040 Hb_001247_100--Hb_021068_040 Hb_030736_080 Hb_030736_080 Hb_001247_100--Hb_030736_080 Hb_001105_070 Hb_001105_070 Hb_000987_070--Hb_001105_070 Hb_065525_020 Hb_065525_020 Hb_000987_070--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_000987_070--Hb_002030_040 Hb_000705_210 Hb_000705_210 Hb_000987_070--Hb_000705_210 Hb_000201_120 Hb_000201_120 Hb_000987_070--Hb_000201_120 Hb_000987_070--Hb_030736_080 Hb_000030_030 Hb_000030_030 Hb_003502_060--Hb_000030_030 Hb_008013_050 Hb_008013_050 Hb_003502_060--Hb_008013_050 Hb_002301_150 Hb_002301_150 Hb_003502_060--Hb_002301_150 Hb_089032_030 Hb_089032_030 Hb_003502_060--Hb_089032_030 Hb_003151_040 Hb_003151_040 Hb_003502_060--Hb_003151_040 Hb_015778_010 Hb_015778_010 Hb_003502_060--Hb_015778_010 Hb_009486_020 Hb_009486_020 Hb_004052_050--Hb_009486_020 Hb_018124_010 Hb_018124_010 Hb_004052_050--Hb_018124_010 Hb_000805_240 Hb_000805_240 Hb_004052_050--Hb_000805_240 Hb_152784_010 Hb_152784_010 Hb_004052_050--Hb_152784_010 Hb_007192_100 Hb_007192_100 Hb_004052_050--Hb_007192_100 Hb_001519_050 Hb_001519_050 Hb_000005_080--Hb_001519_050 Hb_000005_080--Hb_000705_210 Hb_002061_040 Hb_002061_040 Hb_000005_080--Hb_002061_040 Hb_000009_460 Hb_000009_460 Hb_000005_080--Hb_000009_460 Hb_004738_100 Hb_004738_100 Hb_000005_080--Hb_004738_100 Hb_021068_040--Hb_000805_240 Hb_005846_040 Hb_005846_040 Hb_021068_040--Hb_005846_040 Hb_006615_240 Hb_006615_240 Hb_021068_040--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_021068_040--Hb_000205_090 Hb_003582_060 Hb_003582_060 Hb_021068_040--Hb_003582_060 Hb_021068_040--Hb_003151_040 Hb_000905_060 Hb_000905_060 Hb_030736_080--Hb_000905_060 Hb_000635_180 Hb_000635_180 Hb_030736_080--Hb_000635_180 Hb_001832_060 Hb_001832_060 Hb_030736_080--Hb_001832_060 Hb_004453_170 Hb_004453_170 Hb_030736_080--Hb_004453_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.8676 70.1784 54.7892 111.161 42.3371 68.8395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
153.234 136.639 101.369 54.8343 34.302

CAGE analysis