Hb_001247_130

Information

Type -
Description -
Location Contig1247: 70678-75903
Sequence    

Annotation

kegg
ID vvi:100258056
description shaggy-related protein kinase alpha
nr
ID XP_012088843.1
description PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
swissprot
ID P43288
description Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=1 SV=3
trembl
ID A0A067JUY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23182 PE=4 SV=1
Gene Ontology
ID GO:0004672
description shaggy-related protein kinase alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07482: 70740-75896 , PASA_asmbl_07483: 71470-71885
cDNA
(Sanger)
(ID:Location)		 052_K10.ab1: 73651-75889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_130 0.0 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
2 Hb_032208_040 0.0601724 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Populus euphratica]
3 Hb_005137_050 0.0688360269 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
4 Hb_001728_050 0.0708333323 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
5 Hb_004357_020 0.0709214629 - - PREDICTED: uncharacterized protein LOC105637355 [Jatropha curcas]
6 Hb_001946_040 0.0760093938 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000130_240 0.0771178581 - - hypothetical protein RCOM_1520720 [Ricinus communis]
8 Hb_111198_010 0.0771634843 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
9 Hb_004055_150 0.0813700391 - - conserved hypothetical protein [Ricinus communis]
10 Hb_032264_060 0.0817402191 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
11 Hb_002078_110 0.083845017 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
12 Hb_000070_080 0.0843106168 - - PREDICTED: uncharacterized protein LOC105645742 isoform X2 [Jatropha curcas]
13 Hb_005306_160 0.0845767558 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
14 Hb_020367_050 0.0846346669 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl pyrophosphate synthase, putative [Ricinus communis]
15 Hb_000576_020 0.0857062248 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
16 Hb_002411_030 0.0860174204 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
17 Hb_001926_030 0.0871935612 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
18 Hb_005965_030 0.0874710503 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
19 Hb_000185_070 0.0894817159 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000803_070 0.0895615517 - - PREDICTED: protein TRAUCO [Jatropha curcas]

Gene co-expression network

sample Hb_001247_130 Hb_001247_130 Hb_032208_040 Hb_032208_040 Hb_001247_130--Hb_032208_040 Hb_005137_050 Hb_005137_050 Hb_001247_130--Hb_005137_050 Hb_001728_050 Hb_001728_050 Hb_001247_130--Hb_001728_050 Hb_004357_020 Hb_004357_020 Hb_001247_130--Hb_004357_020 Hb_001946_040 Hb_001946_040 Hb_001247_130--Hb_001946_040 Hb_000130_240 Hb_000130_240 Hb_001247_130--Hb_000130_240 Hb_020367_050 Hb_020367_050 Hb_032208_040--Hb_020367_050 Hb_004055_150 Hb_004055_150 Hb_032208_040--Hb_004055_150 Hb_005965_030 Hb_005965_030 Hb_032208_040--Hb_005965_030 Hb_006960_050 Hb_006960_050 Hb_032208_040--Hb_006960_050 Hb_001926_030 Hb_001926_030 Hb_032208_040--Hb_001926_030 Hb_152175_010 Hb_152175_010 Hb_005137_050--Hb_152175_010 Hb_002411_030 Hb_002411_030 Hb_005137_050--Hb_002411_030 Hb_005137_050--Hb_032208_040 Hb_000061_470 Hb_000061_470 Hb_005137_050--Hb_000061_470 Hb_005137_050--Hb_000130_240 Hb_000803_070 Hb_000803_070 Hb_001728_050--Hb_000803_070 Hb_001728_050--Hb_004357_020 Hb_001751_140 Hb_001751_140 Hb_001728_050--Hb_001751_140 Hb_003927_040 Hb_003927_040 Hb_001728_050--Hb_003927_040 Hb_032264_060 Hb_032264_060 Hb_001728_050--Hb_032264_060 Hb_000162_030 Hb_000162_030 Hb_004357_020--Hb_000162_030 Hb_003633_070 Hb_003633_070 Hb_004357_020--Hb_003633_070 Hb_000070_080 Hb_000070_080 Hb_004357_020--Hb_000070_080 Hb_000162_280 Hb_000162_280 Hb_004357_020--Hb_000162_280 Hb_031527_020 Hb_031527_020 Hb_001946_040--Hb_031527_020 Hb_000336_250 Hb_000336_250 Hb_001946_040--Hb_000336_250 Hb_000309_040 Hb_000309_040 Hb_001946_040--Hb_000309_040 Hb_003371_150 Hb_003371_150 Hb_001946_040--Hb_003371_150 Hb_001946_040--Hb_004055_150 Hb_111198_010 Hb_111198_010 Hb_000130_240--Hb_111198_010 Hb_000307_190 Hb_000307_190 Hb_000130_240--Hb_000307_190 Hb_000130_240--Hb_002411_030 Hb_000130_240--Hb_032208_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
191.002 166.744 162.096 88.9354 155.237 123.564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.1583 115.636 123.984 86.7135 53.5078

CAGE analysis