Hb_001247_140

Information

Type -
Description -
Location Contig1247: 83494-88097
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07484: 83499-88051
cDNA
(Sanger)
(ID:Location)		 004_K02.ab1: 87369-87779

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_140 0.0 - - -
2 Hb_003299_080 0.0786053691 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
3 Hb_000365_060 0.1088927132 - - 5'->3' exoribonuclease, putative [Ricinus communis]
4 Hb_013753_010 0.1146458031 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
5 Hb_000375_370 0.1244810323 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
6 Hb_031089_030 0.1261151078 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
7 Hb_005122_060 0.127382536 - - unnamed protein product [Vitis vinifera]
8 Hb_005843_040 0.131076307 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
9 Hb_007348_030 0.1409988683 - - PREDICTED: uncharacterized protein LOC105645596 isoform X2 [Jatropha curcas]
10 Hb_000890_220 0.145820411 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
11 Hb_101151_020 0.1458541111 - - DNA binding protein, putative [Ricinus communis]
12 Hb_005914_090 0.1485434652 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
13 Hb_000212_130 0.1490401923 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000787_100 0.1490456431 - - PREDICTED: thiamine thiazole synthase, chloroplastic [Jatropha curcas]
15 Hb_000617_040 0.1493129542 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]
16 Hb_005038_020 0.1518215839 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_010584_010 0.1525800677 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
18 Hb_006501_020 0.1531408761 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
19 Hb_000792_110 0.155802954 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
20 Hb_002609_010 0.1569231961 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_140 Hb_001247_140 Hb_003299_080 Hb_003299_080 Hb_001247_140--Hb_003299_080 Hb_000365_060 Hb_000365_060 Hb_001247_140--Hb_000365_060 Hb_013753_010 Hb_013753_010 Hb_001247_140--Hb_013753_010 Hb_000375_370 Hb_000375_370 Hb_001247_140--Hb_000375_370 Hb_031089_030 Hb_031089_030 Hb_001247_140--Hb_031089_030 Hb_005122_060 Hb_005122_060 Hb_001247_140--Hb_005122_060 Hb_003299_080--Hb_013753_010 Hb_003299_080--Hb_031089_030 Hb_005038_020 Hb_005038_020 Hb_003299_080--Hb_005038_020 Hb_002609_010 Hb_002609_010 Hb_003299_080--Hb_002609_010 Hb_002078_420 Hb_002078_420 Hb_003299_080--Hb_002078_420 Hb_005843_040 Hb_005843_040 Hb_000365_060--Hb_005843_040 Hb_002105_080 Hb_002105_080 Hb_000365_060--Hb_002105_080 Hb_007904_180 Hb_007904_180 Hb_000365_060--Hb_007904_180 Hb_007348_030 Hb_007348_030 Hb_000365_060--Hb_007348_030 Hb_000365_060--Hb_013753_010 Hb_003866_020 Hb_003866_020 Hb_000365_060--Hb_003866_020 Hb_000890_220 Hb_000890_220 Hb_013753_010--Hb_000890_220 Hb_004032_350 Hb_004032_350 Hb_013753_010--Hb_004032_350 Hb_012760_200 Hb_012760_200 Hb_013753_010--Hb_012760_200 Hb_101151_020 Hb_101151_020 Hb_013753_010--Hb_101151_020 Hb_000331_480 Hb_000331_480 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_000375_370--Hb_005122_060 Hb_000375_370--Hb_031089_030 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000375_370--Hb_000365_060 Hb_007257_050 Hb_007257_050 Hb_031089_030--Hb_007257_050 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_005122_060--Hb_006816_410 Hb_006588_050 Hb_006588_050 Hb_005122_060--Hb_006588_050 Hb_005122_060--Hb_002105_080 Hb_006816_300 Hb_006816_300 Hb_005122_060--Hb_006816_300 Hb_015763_020 Hb_015763_020 Hb_005122_060--Hb_015763_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
330.372 293.208 13.5858 29.0357 342.072 500.666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.6128 19.9174 68.941 98.7654 22.8268

CAGE analysis