Hb_001247_160

Information

Type -
Description -
Location Contig1247: 92127-96057
Sequence    

Annotation

kegg
ID rcu:RCOM_1436370
description s-adenosylmethionine synthetase, putative (EC:2.5.1.6)
nr
ID XP_002512570.1
description s-adenosylmethionine synthetase, putative [Ricinus communis]
swissprot
ID Q307Y9
description S-adenosylmethionine synthase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1
trembl
ID B9RFQ1
description S-adenosylmethionine synthase OS=Ricinus communis GN=RCOM_1436370 PE=3 SV=1
Gene Ontology
ID GO:0005737
description s-adenosylmethionine synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07486: 91486-94444 , PASA_asmbl_07487: 91486-94452
cDNA
(Sanger)
(ID:Location)		 018_B01.ab1: 93067-94441 , 021_E08.ab1: 93074-94441 , 029_L09.ab1: 93187-94441 , 034_M09.ab1: 93055-94444 , 049_M15.ab1: 93344-94441 , 053_M14.ab1: 93042-94441

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_160 0.0 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
2 Hb_003633_150 0.0882401657 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
3 Hb_000985_140 0.0950675211 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
4 Hb_021254_020 0.0951688848 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_001019_020 0.103023649 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002936_030 0.1057014436 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
7 Hb_003078_070 0.1080612114 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
8 Hb_000836_220 0.1104166233 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_004393_030 0.1166962954 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
10 Hb_000071_090 0.1170338491 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
11 Hb_000567_110 0.117250724 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
12 Hb_005282_010 0.1180461884 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
13 Hb_001610_070 0.1223543798 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
14 Hb_138086_010 0.1226750991 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_011915_020 0.1229130354 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
16 Hb_000054_140 0.1237213147 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
17 Hb_094437_050 0.1241221377 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
18 Hb_004109_240 0.1259658915 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_001198_160 0.1262490585 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_004112_050 0.1265968359 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_160 Hb_001247_160 Hb_003633_150 Hb_003633_150 Hb_001247_160--Hb_003633_150 Hb_000985_140 Hb_000985_140 Hb_001247_160--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_001247_160--Hb_021254_020 Hb_001019_020 Hb_001019_020 Hb_001247_160--Hb_001019_020 Hb_002936_030 Hb_002936_030 Hb_001247_160--Hb_002936_030 Hb_003078_070 Hb_003078_070 Hb_001247_160--Hb_003078_070 Hb_009476_110 Hb_009476_110 Hb_003633_150--Hb_009476_110 Hb_005282_010 Hb_005282_010 Hb_003633_150--Hb_005282_010 Hb_182970_010 Hb_182970_010 Hb_003633_150--Hb_182970_010 Hb_000567_110 Hb_000567_110 Hb_003633_150--Hb_000567_110 Hb_001405_060 Hb_001405_060 Hb_003633_150--Hb_001405_060 Hb_004393_030 Hb_004393_030 Hb_000985_140--Hb_004393_030 Hb_000985_140--Hb_003078_070 Hb_000985_140--Hb_021254_020 Hb_000032_090 Hb_000032_090 Hb_000985_140--Hb_000032_090 Hb_000071_090 Hb_000071_090 Hb_000985_140--Hb_000071_090 Hb_021254_020--Hb_004393_030 Hb_004109_240 Hb_004109_240 Hb_021254_020--Hb_004109_240 Hb_008810_030 Hb_008810_030 Hb_021254_020--Hb_008810_030 Hb_021254_020--Hb_003078_070 Hb_001660_130 Hb_001660_130 Hb_021254_020--Hb_001660_130 Hb_094437_050 Hb_094437_050 Hb_001019_020--Hb_094437_050 Hb_002233_080 Hb_002233_080 Hb_001019_020--Hb_002233_080 Hb_000047_010 Hb_000047_010 Hb_001019_020--Hb_000047_010 Hb_012272_010 Hb_012272_010 Hb_001019_020--Hb_012272_010 Hb_011915_020 Hb_011915_020 Hb_001019_020--Hb_011915_020 Hb_005048_120 Hb_005048_120 Hb_002936_030--Hb_005048_120 Hb_007574_050 Hb_007574_050 Hb_002936_030--Hb_007574_050 Hb_002936_030--Hb_005282_010 Hb_002936_030--Hb_003078_070 Hb_002936_030--Hb_012272_010 Hb_000172_410 Hb_000172_410 Hb_003078_070--Hb_000172_410 Hb_004837_200 Hb_004837_200 Hb_003078_070--Hb_004837_200 Hb_003078_070--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_003078_070--Hb_000836_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.38 1752.14 1206.67 1059.55 13.9026 15.2666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.2115 21.7745 29.29 216.89 318.378

CAGE analysis