Hb_001247_200

Information

Type -
Description -
Location Contig1247: 136593-139323
Sequence    

Annotation

kegg
ID pop:POPTR_0005s00550g
description hypothetical protein
nr
ID XP_012088835.1
description PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
swissprot
ID Q9FZ86
description PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
trembl
ID A0A067JHD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23174 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo-1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07489: 136681-136935 , PASA_asmbl_07490: 136965-138506 , PASA_asmbl_07491: 138543-139287
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_200 0.0 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
2 Hb_000384_030 0.1306815121 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
3 Hb_006816_170 0.1412357462 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
4 Hb_000926_120 0.1443702883 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
5 Hb_001152_030 0.1468947718 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
6 Hb_000984_050 0.1523731388 - - sucrose transporter 5 [Hevea brasiliensis]
7 Hb_058643_010 0.1531580085 - - hydrolase, putative [Ricinus communis]
8 Hb_002217_150 0.1577017524 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
9 Hb_004567_100 0.1610455594 - - PREDICTED: uncharacterized protein LOC105644934 [Jatropha curcas]
10 Hb_000027_030 0.1621183664 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_001675_070 0.1621490378 - - eukaryotic translation elongation factor, putative [Ricinus communis]
12 Hb_007101_180 0.1647586136 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
13 Hb_000513_070 0.1679625323 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
14 Hb_000504_090 0.1701356452 - - PREDICTED: titin isoform X10 [Jatropha curcas]
15 Hb_004221_050 0.1714932934 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
16 Hb_006452_090 0.1724478204 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
17 Hb_002431_020 0.1732679663 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
18 Hb_001221_150 0.1747823968 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
19 Hb_001136_090 0.175358742 - - Protein PNS1, putative [Ricinus communis]
20 Hb_000749_110 0.1789076847 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_200 Hb_001247_200 Hb_000384_030 Hb_000384_030 Hb_001247_200--Hb_000384_030 Hb_006816_170 Hb_006816_170 Hb_001247_200--Hb_006816_170 Hb_000926_120 Hb_000926_120 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_000984_050 Hb_000984_050 Hb_001247_200--Hb_000984_050 Hb_058643_010 Hb_058643_010 Hb_001247_200--Hb_058643_010 Hb_001278_070 Hb_001278_070 Hb_000384_030--Hb_001278_070 Hb_000384_030--Hb_058643_010 Hb_002217_150 Hb_002217_150 Hb_000384_030--Hb_002217_150 Hb_000384_030--Hb_006816_170 Hb_009898_020 Hb_009898_020 Hb_000384_030--Hb_009898_020 Hb_002489_010 Hb_002489_010 Hb_006816_170--Hb_002489_010 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_005295_040 Hb_005295_040 Hb_000926_120--Hb_005295_040 Hb_005635_010 Hb_005635_010 Hb_000926_120--Hb_005635_010 Hb_000136_150 Hb_000136_150 Hb_000926_120--Hb_000136_150 Hb_031754_010 Hb_031754_010 Hb_000926_120--Hb_031754_010 Hb_001433_190 Hb_001433_190 Hb_000926_120--Hb_001433_190 Hb_000631_150 Hb_000631_150 Hb_000926_120--Hb_000631_150 Hb_000072_350 Hb_000072_350 Hb_001152_030--Hb_000072_350 Hb_001502_060 Hb_001502_060 Hb_001152_030--Hb_001502_060 Hb_000529_260 Hb_000529_260 Hb_001152_030--Hb_000529_260 Hb_001080_270 Hb_001080_270 Hb_001152_030--Hb_001080_270 Hb_001140_250 Hb_001140_250 Hb_001152_030--Hb_001140_250 Hb_001221_150 Hb_001221_150 Hb_001152_030--Hb_001221_150 Hb_000984_050--Hb_000926_120 Hb_000181_250 Hb_000181_250 Hb_000984_050--Hb_000181_250 Hb_000115_310 Hb_000115_310 Hb_000984_050--Hb_000115_310 Hb_011218_080 Hb_011218_080 Hb_000984_050--Hb_011218_080 Hb_000027_030 Hb_000027_030 Hb_000984_050--Hb_000027_030 Hb_005211_100 Hb_005211_100 Hb_058643_010--Hb_005211_100 Hb_003988_010 Hb_003988_010 Hb_058643_010--Hb_003988_010 Hb_005147_060 Hb_005147_060 Hb_058643_010--Hb_005147_060 Hb_001675_070 Hb_001675_070 Hb_058643_010--Hb_001675_070 Hb_011310_160 Hb_011310_160 Hb_058643_010--Hb_011310_160 Hb_001357_270 Hb_001357_270 Hb_058643_010--Hb_001357_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7953 23.5491 5.59484 22.3699 112.579 51.517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1122 10.467 28.1344 58.4874 12.8276

CAGE analysis