Hb_001247_230

Information

Type -
Description -
Location Contig1247: 163892-169730
Sequence    

Annotation

kegg
ID rcu:RCOM_1436620
description nucleic acid binding protein, putative
nr
ID XP_002512575.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFQ6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1436620 PE=4 SV=1
Gene Ontology
ID GO:0005777
description endonuclease or glycosyl hydrolase with c2h2-type zinc finger isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07496: 164031-168028 , PASA_asmbl_07497: 168029-169791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_230 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001999_250 0.0903373877 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
3 Hb_002849_080 0.0975977256 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
4 Hb_148209_020 0.1022789282 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
5 Hb_000265_250 0.1031960626 - - auxilin, putative [Ricinus communis]
6 Hb_002609_010 0.1055535563 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
7 Hb_000116_570 0.1142692607 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
8 Hb_003349_010 0.1151168829 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
9 Hb_010883_080 0.1249342195 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
10 Hb_005038_020 0.1273294229 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000016_280 0.1277229333 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
12 Hb_002477_150 0.1317128257 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
13 Hb_006316_070 0.1330468387 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
14 Hb_009646_050 0.1335358211 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006501_060 0.1338876053 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
16 Hb_002977_010 0.1341653847 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
17 Hb_003299_080 0.134307172 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
18 Hb_002783_050 0.1343265735 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000685_080 0.1345026278 - - protein binding protein, putative [Ricinus communis]
20 Hb_011465_030 0.1350375923 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_001247_230 Hb_001247_230 Hb_001999_250 Hb_001999_250 Hb_001247_230--Hb_001999_250 Hb_002849_080 Hb_002849_080 Hb_001247_230--Hb_002849_080 Hb_148209_020 Hb_148209_020 Hb_001247_230--Hb_148209_020 Hb_000265_250 Hb_000265_250 Hb_001247_230--Hb_000265_250 Hb_002609_010 Hb_002609_010 Hb_001247_230--Hb_002609_010 Hb_000116_570 Hb_000116_570 Hb_001247_230--Hb_000116_570 Hb_003349_010 Hb_003349_010 Hb_001999_250--Hb_003349_010 Hb_001999_250--Hb_000265_250 Hb_001504_190 Hb_001504_190 Hb_001999_250--Hb_001504_190 Hb_075449_020 Hb_075449_020 Hb_001999_250--Hb_075449_020 Hb_001999_250--Hb_002849_080 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_000265_250--Hb_011465_030 Hb_000265_250--Hb_002477_150 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_000265_250--Hb_002849_080 Hb_002609_010--Hb_148209_020 Hb_002609_010--Hb_006316_070 Hb_000413_170 Hb_000413_170 Hb_002609_010--Hb_000413_170 Hb_002609_010--Hb_000265_250 Hb_000016_280 Hb_000016_280 Hb_000116_570--Hb_000016_280 Hb_010883_080 Hb_010883_080 Hb_000116_570--Hb_010883_080 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000685_080 Hb_000685_080 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.1755 132.17 21.6423 7.08192 105.267 91.0465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.1617 14.193 16.232 21.9872 5.81091

CAGE analysis