Hb_001247_260

Information

Type -
Description -
Location Contig1247: 178068-179227
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_260 0.0 - - -
2 Hb_000636_010 0.0687456281 - - PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
3 Hb_000959_050 0.1615108088 - - PREDICTED: uncharacterized protein LOC102627366 [Citrus sinensis]
4 Hb_032733_030 0.2011621248 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
5 Hb_080033_020 0.2235032581 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
6 Hb_000512_050 0.2360317932 - - hypothetical protein VITISV_005640 [Vitis vinifera]
7 Hb_028248_010 0.2385748597 - - polyprotein [Oryza australiensis]
8 Hb_028048_020 0.2412078851 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_005623_060 0.2413847861 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001587_050 0.2423260495 - - -
11 Hb_003302_010 0.2459905725 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
12 Hb_027917_010 0.2477693995 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
13 Hb_089568_010 0.2482564441 - - ferric reductase oxidase [Manihot esculenta]
14 Hb_002760_020 0.249212515 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
15 Hb_000060_130 0.2551324605 - - -
16 Hb_062192_010 0.2573312128 - - -
17 Hb_000826_080 0.2576578321 - - -
18 Hb_150516_010 0.2591593599 - - PREDICTED: uncharacterized protein LOC104886268, partial [Beta vulgaris subsp. vulgaris]
19 Hb_144045_010 0.2611831222 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
20 Hb_003527_020 0.2636542184 - - BnaC01g27150D [Brassica napus]

Gene co-expression network

sample Hb_001247_260 Hb_001247_260 Hb_000636_010 Hb_000636_010 Hb_001247_260--Hb_000636_010 Hb_000959_050 Hb_000959_050 Hb_001247_260--Hb_000959_050 Hb_032733_030 Hb_032733_030 Hb_001247_260--Hb_032733_030 Hb_080033_020 Hb_080033_020 Hb_001247_260--Hb_080033_020 Hb_000512_050 Hb_000512_050 Hb_001247_260--Hb_000512_050 Hb_028248_010 Hb_028248_010 Hb_001247_260--Hb_028248_010 Hb_000636_010--Hb_000959_050 Hb_028048_020 Hb_028048_020 Hb_000636_010--Hb_028048_020 Hb_000636_010--Hb_080033_020 Hb_000636_010--Hb_032733_030 Hb_003527_020 Hb_003527_020 Hb_000636_010--Hb_003527_020 Hb_000060_130 Hb_000060_130 Hb_000959_050--Hb_000060_130 Hb_000959_050--Hb_003527_020 Hb_002154_080 Hb_002154_080 Hb_000959_050--Hb_002154_080 Hb_007543_020 Hb_007543_020 Hb_000959_050--Hb_007543_020 Hb_000522_030 Hb_000522_030 Hb_032733_030--Hb_000522_030 Hb_012528_040 Hb_012528_040 Hb_032733_030--Hb_012528_040 Hb_014109_020 Hb_014109_020 Hb_032733_030--Hb_014109_020 Hb_000135_080 Hb_000135_080 Hb_032733_030--Hb_000135_080 Hb_005623_060 Hb_005623_060 Hb_032733_030--Hb_005623_060 Hb_005678_030 Hb_005678_030 Hb_032733_030--Hb_005678_030 Hb_080033_020--Hb_000512_050 Hb_080033_020--Hb_005623_060 Hb_003302_010 Hb_003302_010 Hb_080033_020--Hb_003302_010 Hb_001587_050 Hb_001587_050 Hb_080033_020--Hb_001587_050 Hb_004407_030 Hb_004407_030 Hb_080033_020--Hb_004407_030 Hb_003169_040 Hb_003169_040 Hb_080033_020--Hb_003169_040 Hb_000512_050--Hb_005623_060 Hb_000512_050--Hb_003169_040 Hb_180214_010 Hb_180214_010 Hb_000512_050--Hb_180214_010 Hb_150516_010 Hb_150516_010 Hb_000512_050--Hb_150516_010 Hb_000512_050--Hb_003302_010 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_165100_010 Hb_165100_010 Hb_028248_010--Hb_165100_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010 Hb_085793_010 Hb_085793_010 Hb_028248_010--Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_028248_010--Hb_003205_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0416764 0.0772488 0 0.0492736 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0369184 0.341891

CAGE analysis