Hb_001247_350

Information

Type -
Description -
Location Contig1247: 277728-279577
Sequence    

Annotation

kegg
ID pmum:103344512
description anaphase-promoting complex subunit 11-like
nr
ID XP_012089424.1
description PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
swissprot
ID Q9M9L0
description Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana GN=APC11 PE=1 SV=2
trembl
ID M5WHW9
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021267mg PE=4 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_350 0.0 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
2 Hb_002716_090 0.0682273485 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
3 Hb_005496_030 0.0783094908 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
4 Hb_000526_040 0.0784361371 - - 60S ribosomal protein L6, putative [Ricinus communis]
5 Hb_000545_150 0.079434218 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_000948_190 0.0908932169 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
7 Hb_032202_090 0.0923788156 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
8 Hb_001638_260 0.0951670979 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
9 Hb_000086_070 0.0966124902 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
10 Hb_000317_340 0.0967219271 - - conserved hypothetical protein [Ricinus communis]
11 Hb_012573_070 0.0981150331 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003058_220 0.0984731893 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
13 Hb_171900_050 0.0986222047 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000505_140 0.0995594834 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
15 Hb_012022_120 0.1012189804 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
16 Hb_001080_080 0.102742971 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
17 Hb_001314_100 0.102759027 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
18 Hb_003927_140 0.1035141854 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_001383_060 0.103533354 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
20 Hb_003927_130 0.1048195124 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]

Gene co-expression network

sample Hb_001247_350 Hb_001247_350 Hb_002716_090 Hb_002716_090 Hb_001247_350--Hb_002716_090 Hb_005496_030 Hb_005496_030 Hb_001247_350--Hb_005496_030 Hb_000526_040 Hb_000526_040 Hb_001247_350--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_001247_350--Hb_000545_150 Hb_000948_190 Hb_000948_190 Hb_001247_350--Hb_000948_190 Hb_032202_090 Hb_032202_090 Hb_001247_350--Hb_032202_090 Hb_001638_260 Hb_001638_260 Hb_002716_090--Hb_001638_260 Hb_003927_140 Hb_003927_140 Hb_002716_090--Hb_003927_140 Hb_002716_090--Hb_005496_030 Hb_009554_010 Hb_009554_010 Hb_002716_090--Hb_009554_010 Hb_001214_140 Hb_001214_140 Hb_002716_090--Hb_001214_140 Hb_005496_030--Hb_000526_040 Hb_005496_030--Hb_000545_150 Hb_005496_030--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090 Hb_000526_040--Hb_000545_150 Hb_000526_040--Hb_001638_260 Hb_012573_070 Hb_012573_070 Hb_000526_040--Hb_012573_070 Hb_002660_030 Hb_002660_030 Hb_000526_040--Hb_002660_030 Hb_000545_150--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_000545_150--Hb_032202_090 Hb_000545_150--Hb_001638_260 Hb_007432_080 Hb_007432_080 Hb_000948_190--Hb_007432_080 Hb_003919_010 Hb_003919_010 Hb_000948_190--Hb_003919_010 Hb_168054_010 Hb_168054_010 Hb_000948_190--Hb_168054_010 Hb_000975_250 Hb_000975_250 Hb_000948_190--Hb_000975_250 Hb_004502_020 Hb_004502_020 Hb_000948_190--Hb_004502_020 Hb_032202_090--Hb_000317_340 Hb_012022_120 Hb_012022_120 Hb_032202_090--Hb_012022_120 Hb_000505_140 Hb_000505_140 Hb_032202_090--Hb_000505_140 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.4791 6.99607 19.7328 22.5486 28.3528 61.164
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.3052 102.887 36.8435 11.6316 8.07695

CAGE analysis