Hb_001248_020

Information

Type -
Description -
Location Contig1248: 37701-39933
Sequence    

Annotation

kegg
ID rcu:RCOM_0174730
description hypothetical protein
nr
ID XP_012068249.1
description PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
swissprot
ID O64818
description Uncharacterized protein At2g23090 OS=Arabidopsis thaliana GN=At2g23090 PE=1 SV=1
trembl
ID B9SNB9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07509: 38509-39146 , PASA_asmbl_07510: 37683-39968 , PASA_asmbl_07511: 38184-38444
cDNA
(Sanger)
(ID:Location)		 014_E02.ab1: 37683-39749 , 022_M09.ab1: 37719-39685 , 048_O11.ab1: 37719-39768

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_020 0.0 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
2 Hb_036369_010 0.070078573 - - -
3 Hb_003398_060 0.081440461 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_025246_010 0.1030845762 - - -
5 Hb_012395_100 0.1102741833 - - eukaryotic translation initiation factor 4e, putative [Ricinus communis]
6 Hb_023675_010 0.1104875016 - - -
7 Hb_004852_020 0.1172358429 - - -
8 Hb_017895_050 0.1231727799 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
9 Hb_170305_020 0.1246075567 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
10 Hb_003057_130 0.1268663831 - - -
11 Hb_002518_250 0.1274923679 - - conserved hypothetical protein 10 [Hevea brasiliensis]
12 Hb_001437_040 0.1301374382 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
13 Hb_000366_100 0.1309578448 - - 60S ribosomal protein L7aA [Hevea brasiliensis]
14 Hb_004242_100 0.1311659834 - - RNA binding protein, putative [Ricinus communis]
15 Hb_000984_190 0.132464052 - - -
16 Hb_003453_010 0.1337845724 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000284_010 0.1349852105 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
18 Hb_010578_090 0.1355560203 - - HEV2.1 [Hevea brasiliensis]
19 Hb_004072_010 0.1357594003 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
20 Hb_115919_020 0.137847895 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001248_020 Hb_001248_020 Hb_036369_010 Hb_036369_010 Hb_001248_020--Hb_036369_010 Hb_003398_060 Hb_003398_060 Hb_001248_020--Hb_003398_060 Hb_025246_010 Hb_025246_010 Hb_001248_020--Hb_025246_010 Hb_012395_100 Hb_012395_100 Hb_001248_020--Hb_012395_100 Hb_023675_010 Hb_023675_010 Hb_001248_020--Hb_023675_010 Hb_004852_020 Hb_004852_020 Hb_001248_020--Hb_004852_020 Hb_000366_100 Hb_000366_100 Hb_036369_010--Hb_000366_100 Hb_036369_010--Hb_023675_010 Hb_170305_020 Hb_170305_020 Hb_036369_010--Hb_170305_020 Hb_036369_010--Hb_003398_060 Hb_036369_010--Hb_025246_010 Hb_003453_010 Hb_003453_010 Hb_003398_060--Hb_003453_010 Hb_000984_190 Hb_000984_190 Hb_003398_060--Hb_000984_190 Hb_017895_050 Hb_017895_050 Hb_003398_060--Hb_017895_050 Hb_003398_060--Hb_025246_010 Hb_003057_130 Hb_003057_130 Hb_025246_010--Hb_003057_130 Hb_003057_050 Hb_003057_050 Hb_025246_010--Hb_003057_050 Hb_000699_110 Hb_000699_110 Hb_025246_010--Hb_000699_110 Hb_025246_010--Hb_000984_190 Hb_000175_520 Hb_000175_520 Hb_012395_100--Hb_000175_520 Hb_012395_100--Hb_023675_010 Hb_012395_100--Hb_036369_010 Hb_004545_160 Hb_004545_160 Hb_012395_100--Hb_004545_160 Hb_012395_100--Hb_004852_020 Hb_023675_010--Hb_000366_100 Hb_023675_010--Hb_004852_020 Hb_077562_040 Hb_077562_040 Hb_023675_010--Hb_077562_040 Hb_004852_020--Hb_000175_520 Hb_007317_220 Hb_007317_220 Hb_004852_020--Hb_007317_220 Hb_002942_030 Hb_002942_030 Hb_004852_020--Hb_002942_030 Hb_002518_250 Hb_002518_250 Hb_004852_020--Hb_002518_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
569.68 41.047 13.9531 33.7154 421.378 829.864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1001.82 566.825 207.028 166.456 16.8003

CAGE analysis