Hb_001248_050

Information

Type -
Description -
Location Contig1248: 62760-69483
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09380g
description POPTRDRAFT_202030; hypothetical protein
nr
ID XP_012093095.1
description PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
swissprot
ID Q54FR4
description PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1
trembl
ID A0A067L7S6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16305 PE=4 SV=1
Gene Ontology
ID GO:0016021
description pxmp2 4 family protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07513: 62857-69366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_050 0.0 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
2 Hb_004221_010 0.0692506921 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
3 Hb_000877_060 0.0785361713 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
4 Hb_000085_270 0.0829095401 - - PREDICTED: pirin-like protein [Malus domestica]
5 Hb_001138_050 0.0851172248 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
6 Hb_004109_200 0.0870616237 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
7 Hb_000483_350 0.0875620798 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
8 Hb_004920_040 0.0878544577 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
9 Hb_002762_060 0.0880017313 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
10 Hb_015026_120 0.0890724323 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
11 Hb_000720_120 0.0917723534 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
12 Hb_158092_070 0.0929065074 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
13 Hb_024835_030 0.0937382878 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_005062_070 0.0942954157 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
15 Hb_001671_080 0.0952780492 - - amino acid binding protein, putative [Ricinus communis]
16 Hb_000032_570 0.095844032 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
17 Hb_000371_080 0.0958908089 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
18 Hb_003540_040 0.0965048141 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
19 Hb_003392_040 0.0970630259 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
20 Hb_000139_410 0.0977683067 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_001248_050 Hb_001248_050 Hb_004221_010 Hb_004221_010 Hb_001248_050--Hb_004221_010 Hb_000877_060 Hb_000877_060 Hb_001248_050--Hb_000877_060 Hb_000085_270 Hb_000085_270 Hb_001248_050--Hb_000085_270 Hb_001138_050 Hb_001138_050 Hb_001248_050--Hb_001138_050 Hb_004109_200 Hb_004109_200 Hb_001248_050--Hb_004109_200 Hb_000483_350 Hb_000483_350 Hb_001248_050--Hb_000483_350 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_002762_060 Hb_002762_060 Hb_004221_010--Hb_002762_060 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_004221_010--Hb_000877_060 Hb_012022_030 Hb_012022_030 Hb_000877_060--Hb_012022_030 Hb_011828_020 Hb_011828_020 Hb_000877_060--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_000877_060--Hb_000720_120 Hb_000877_060--Hb_002762_060 Hb_000085_270--Hb_000483_350 Hb_000085_270--Hb_004109_200 Hb_000085_270--Hb_004221_010 Hb_000085_270--Hb_004055_010 Hb_004920_040 Hb_004920_040 Hb_000085_270--Hb_004920_040 Hb_000398_180 Hb_000398_180 Hb_001138_050--Hb_000398_180 Hb_001138_050--Hb_000720_120 Hb_001377_290 Hb_001377_290 Hb_001138_050--Hb_001377_290 Hb_005357_030 Hb_005357_030 Hb_001138_050--Hb_005357_030 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_019253_020 Hb_019253_020 Hb_001138_050--Hb_019253_020 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_004109_200--Hb_000483_350 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_000483_350--Hb_004055_010 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.265 10.5184 4.94392 5.14866 13.1008 24.0596
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4979 23.0902 18.4891 10.6577 5.6662

CAGE analysis