Hb_001248_060

Information

Type -
Description -
Location Contig1248: 70961-72034
Sequence    

Annotation

kegg
ID rcu:RCOM_0174780
description hypothetical protein
nr
ID XP_002527493.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174780 PE=4 SV=1
Gene Ontology
ID GO:0070461
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010618_010 0.0283669084 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
3 Hb_001409_020 0.0436516663 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
4 Hb_011995_010 0.0528309315 - - dc50, putative [Ricinus communis]
5 Hb_000289_060 0.0541337388 - - PREDICTED: uncharacterized protein At1g18480 [Jatropha curcas]
6 Hb_015934_040 0.0565498112 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
7 Hb_001408_040 0.057069804 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
8 Hb_000152_380 0.0579794548 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
9 Hb_004221_020 0.0594321337 - - protein binding protein, putative [Ricinus communis]
10 Hb_016172_020 0.0597566012 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
11 Hb_013399_100 0.0598644161 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006634_070 0.0615445897 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
13 Hb_000563_320 0.0621557843 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
14 Hb_007416_180 0.0625253333 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
15 Hb_000757_060 0.0627008763 - - hypothetical protein PRUPE_ppa001141mg [Prunus persica]
16 Hb_000484_030 0.0658888291 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
17 Hb_000225_040 0.0660300692 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
18 Hb_008406_200 0.0667245476 transcription factor TF Family: SNF2 conserved hypothetical protein [Ricinus communis]
19 Hb_000173_490 0.0668494104 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
20 Hb_002518_280 0.0672619604 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_001248_060 Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_001248_060--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_001248_060--Hb_001409_020 Hb_011995_010 Hb_011995_010 Hb_001248_060--Hb_011995_010 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_015934_040 Hb_015934_040 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040 Hb_010618_010--Hb_001409_020 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_002518_280 Hb_002518_280 Hb_010618_010--Hb_002518_280 Hb_010618_010--Hb_011995_010 Hb_013399_100 Hb_013399_100 Hb_001409_020--Hb_013399_100 Hb_167498_010 Hb_167498_010 Hb_001409_020--Hb_167498_010 Hb_008406_200 Hb_008406_200 Hb_001409_020--Hb_008406_200 Hb_007576_110 Hb_007576_110 Hb_001409_020--Hb_007576_110 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320 Hb_004221_020 Hb_004221_020 Hb_000289_060--Hb_004221_020 Hb_000538_270 Hb_000538_270 Hb_000289_060--Hb_000538_270 Hb_002686_030 Hb_002686_030 Hb_000289_060--Hb_002686_030 Hb_000289_060--Hb_010618_010 Hb_077562_050 Hb_077562_050 Hb_000289_060--Hb_077562_050 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_010128_080 Hb_010128_080 Hb_015934_040--Hb_010128_080 Hb_000032_520 Hb_000032_520 Hb_015934_040--Hb_000032_520 Hb_001635_090 Hb_001635_090 Hb_001408_040--Hb_001635_090 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.23908 5.63197 4.13286 4.77112 5.84012 7.28195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54718 6.13126 6.47774 4.80601 3.60125

CAGE analysis