Hb_001248_110

Information

Type -
Description -
Location Contig1248: 115277-117183
Sequence    

Annotation

kegg
ID pop:POPTR_0185s002102
description hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U7DWJ4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0185s002102g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07519: 116591-117129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_110 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_004466_070 0.1255627544 - - hypothetical protein RCOM_1447500 [Ricinus communis]
3 Hb_000544_020 0.1383865155 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_000566_190 0.1521015299 - - unnamed protein product [Vitis vinifera]
5 Hb_001608_030 0.152666011 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
6 Hb_042553_010 0.1531139023 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
7 Hb_158696_010 0.1555986985 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
8 Hb_001504_270 0.1570284405 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
9 Hb_060909_010 0.161124222 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
10 Hb_002686_400 0.1634352438 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
11 Hb_001863_450 0.1639415583 - - cryptochrome 1.2 [Populus tremula]
12 Hb_006414_020 0.1642546471 transcription factor TF Family: MYB -
13 Hb_007259_020 0.1697378848 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
14 Hb_009897_020 0.1733796795 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
15 Hb_162074_010 0.1737000914 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_010080_020 0.1752239514 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
17 Hb_007253_040 0.1752776442 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
18 Hb_000984_100 0.1761657637 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_004648_100 0.1764953047 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
20 Hb_000803_060 0.1780304487 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001248_110 Hb_001248_110 Hb_004466_070 Hb_004466_070 Hb_001248_110--Hb_004466_070 Hb_000544_020 Hb_000544_020 Hb_001248_110--Hb_000544_020 Hb_000566_190 Hb_000566_190 Hb_001248_110--Hb_000566_190 Hb_001608_030 Hb_001608_030 Hb_001248_110--Hb_001608_030 Hb_042553_010 Hb_042553_010 Hb_001248_110--Hb_042553_010 Hb_158696_010 Hb_158696_010 Hb_001248_110--Hb_158696_010 Hb_001863_450 Hb_001863_450 Hb_004466_070--Hb_001863_450 Hb_004466_070--Hb_158696_010 Hb_004166_010 Hb_004166_010 Hb_004466_070--Hb_004166_010 Hb_033642_070 Hb_033642_070 Hb_004466_070--Hb_033642_070 Hb_003371_140 Hb_003371_140 Hb_004466_070--Hb_003371_140 Hb_060909_010 Hb_060909_010 Hb_000544_020--Hb_060909_010 Hb_000544_020--Hb_158696_010 Hb_000984_100 Hb_000984_100 Hb_000544_020--Hb_000984_100 Hb_004648_100 Hb_004648_100 Hb_000544_020--Hb_004648_100 Hb_000532_130 Hb_000532_130 Hb_000544_020--Hb_000532_130 Hb_006414_020 Hb_006414_020 Hb_000566_190--Hb_006414_020 Hb_002154_020 Hb_002154_020 Hb_000566_190--Hb_002154_020 Hb_000448_060 Hb_000448_060 Hb_000566_190--Hb_000448_060 Hb_000107_440 Hb_000107_440 Hb_000566_190--Hb_000107_440 Hb_012787_040 Hb_012787_040 Hb_000566_190--Hb_012787_040 Hb_007137_030 Hb_007137_030 Hb_001608_030--Hb_007137_030 Hb_093177_010 Hb_093177_010 Hb_001608_030--Hb_093177_010 Hb_001608_030--Hb_158696_010 Hb_010080_020 Hb_010080_020 Hb_001608_030--Hb_010080_020 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_001608_030--Hb_000984_100 Hb_042553_010--Hb_007137_030 Hb_042553_010--Hb_001608_030 Hb_116635_010 Hb_116635_010 Hb_042553_010--Hb_116635_010 Hb_006911_060 Hb_006911_060 Hb_042553_010--Hb_006911_060 Hb_183539_010 Hb_183539_010 Hb_042553_010--Hb_183539_010 Hb_004106_010 Hb_004106_010 Hb_158696_010--Hb_004106_010 Hb_158696_010--Hb_012787_040 Hb_001662_170 Hb_001662_170 Hb_158696_010--Hb_001662_170 Hb_003752_120 Hb_003752_120 Hb_158696_010--Hb_003752_120 Hb_158696_010--Hb_093177_010 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.31486 14.6707 1.53718 3.11614 0.605673 2.17379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.256744 0.100944 0.366434 2.42796 1.32198

CAGE analysis