Hb_001248_140

Information

Type -
Description -
Location Contig1248: 140564-141149
Sequence    

Annotation

kegg
ID rcu:RCOM_1293230
description Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative
nr
ID XP_002526766.1
description Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P82658
description Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2
trembl
ID B9SL97
description Thylakoid lumenal 19 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1293230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_140 0.0 - - Thylakoid lumenal 19 kDa protein, chloroplast precursor, putative [Ricinus communis]
2 Hb_044380_010 0.1151653055 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Malus domestica]
3 Hb_003714_030 0.1174036279 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
4 Hb_004530_010 0.1257588218 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
5 Hb_102761_010 0.128450431 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
6 Hb_000054_130 0.1388071828 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
7 Hb_010721_040 0.1399216433 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
8 Hb_181463_020 0.1463520018 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
9 Hb_011519_040 0.1511764466 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
10 Hb_094437_030 0.1540648268 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
11 Hb_151870_010 0.1551308727 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_000649_090 0.1588561227 - - unnamed protein product [Vitis vinifera]
13 Hb_091236_010 0.1599102876 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]
14 Hb_006807_010 0.1611839654 - - hypothetical protein JCGZ_20881 [Jatropha curcas]
15 Hb_051410_010 0.1630453589 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
16 Hb_032143_010 0.1653617025 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
17 Hb_011501_020 0.1667558496 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
18 Hb_000914_010 0.1671734627 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
19 Hb_186765_010 0.1687143568 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
20 Hb_000946_130 0.1692971095 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]

Gene co-expression network

sample Hb_001248_140 Hb_001248_140 Hb_044380_010 Hb_044380_010 Hb_001248_140--Hb_044380_010 Hb_003714_030 Hb_003714_030 Hb_001248_140--Hb_003714_030 Hb_004530_010 Hb_004530_010 Hb_001248_140--Hb_004530_010 Hb_102761_010 Hb_102761_010 Hb_001248_140--Hb_102761_010 Hb_000054_130 Hb_000054_130 Hb_001248_140--Hb_000054_130 Hb_010721_040 Hb_010721_040 Hb_001248_140--Hb_010721_040 Hb_044380_010--Hb_003714_030 Hb_044380_010--Hb_004530_010 Hb_186765_010 Hb_186765_010 Hb_044380_010--Hb_186765_010 Hb_001396_130 Hb_001396_130 Hb_044380_010--Hb_001396_130 Hb_011519_040 Hb_011519_040 Hb_044380_010--Hb_011519_040 Hb_000207_240 Hb_000207_240 Hb_003714_030--Hb_000207_240 Hb_001097_140 Hb_001097_140 Hb_003714_030--Hb_001097_140 Hb_003714_030--Hb_001396_130 Hb_003714_030--Hb_004530_010 Hb_004530_010--Hb_102761_010 Hb_004530_010--Hb_010721_040 Hb_000997_370 Hb_000997_370 Hb_004530_010--Hb_000997_370 Hb_014510_030 Hb_014510_030 Hb_102761_010--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_102761_010--Hb_000415_080 Hb_004896_030 Hb_004896_030 Hb_102761_010--Hb_004896_030 Hb_102761_010--Hb_010721_040 Hb_000627_110 Hb_000627_110 Hb_102761_010--Hb_000627_110 Hb_001622_020 Hb_001622_020 Hb_000054_130--Hb_001622_020 Hb_167211_010 Hb_167211_010 Hb_000054_130--Hb_167211_010 Hb_001778_040 Hb_001778_040 Hb_000054_130--Hb_001778_040 Hb_181463_020 Hb_181463_020 Hb_000054_130--Hb_181463_020 Hb_001109_170 Hb_001109_170 Hb_000054_130--Hb_001109_170 Hb_000237_120 Hb_000237_120 Hb_000054_130--Hb_000237_120 Hb_094484_010 Hb_094484_010 Hb_010721_040--Hb_094484_010 Hb_000343_090 Hb_000343_090 Hb_010721_040--Hb_000343_090 Hb_025161_030 Hb_025161_030 Hb_010721_040--Hb_025161_030 Hb_008714_030 Hb_008714_030 Hb_010721_040--Hb_008714_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0526892 0.0945123 1.03487 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.518088 1.67171

CAGE analysis