Hb_001248_160

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1248: 145072-145503
Sequence    

Annotation

kegg
ID rcu:RCOM_1293650
description TRANSPARENT TESTA 1 protein, putative
nr
ID XP_002526768.1
description TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
swissprot
ID Q9SVY1
description Zinc finger protein WIP2 OS=Arabidopsis thaliana GN=WIP2 PE=1 SV=1
trembl
ID B9SL99
description TRANSPARENT TESTA 1 protein, putative OS=Ricinus communis GN=RCOM_1293650 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transparent testa 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_160 0.0 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
2 Hb_001136_150 0.0036256226 - - conserved hypothetical protein [Ricinus communis]
3 Hb_163180_010 0.0039232486 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_000130_430 0.0043490627 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
5 Hb_001926_060 0.0050269572 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
6 Hb_007058_020 0.0060061113 - - -
7 Hb_000330_010 0.0093049297 - - hypothetical protein POPTR_0005s25020g [Populus trichocarpa]
8 Hb_086639_110 0.0094579491 transcription factor TF Family: G2-like DNA binding protein, putative [Theobroma cacao]
9 Hb_176760_010 0.0132323996 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
10 Hb_000107_690 0.0137022023 - - zinc finger protein, putative [Ricinus communis]
11 Hb_003251_020 0.0139345902 - - Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Gossypium arboreum]
12 Hb_158909_010 0.0146555705 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_037000_010 0.0176463057 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
14 Hb_004957_040 0.0194866526 - - PREDICTED: uncharacterized protein LOC104890338 [Beta vulgaris subsp. vulgaris]
15 Hb_008895_010 0.0215890148 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000134_140 0.0228142354 - - lipid binding protein, putative [Ricinus communis]
17 Hb_004324_180 0.0229310843 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_039046_010 0.0281474839 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
19 Hb_009615_140 0.0297930573 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
20 Hb_126871_010 0.0301068327 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]

Gene co-expression network

sample Hb_001248_160 Hb_001248_160 Hb_001136_150 Hb_001136_150 Hb_001248_160--Hb_001136_150 Hb_163180_010 Hb_163180_010 Hb_001248_160--Hb_163180_010 Hb_000130_430 Hb_000130_430 Hb_001248_160--Hb_000130_430 Hb_001926_060 Hb_001926_060 Hb_001248_160--Hb_001926_060 Hb_007058_020 Hb_007058_020 Hb_001248_160--Hb_007058_020 Hb_000330_010 Hb_000330_010 Hb_001248_160--Hb_000330_010 Hb_001136_150--Hb_000130_430 Hb_001136_150--Hb_000330_010 Hb_086639_110 Hb_086639_110 Hb_001136_150--Hb_086639_110 Hb_001136_150--Hb_163180_010 Hb_001136_150--Hb_001926_060 Hb_163180_010--Hb_001926_060 Hb_163180_010--Hb_007058_020 Hb_163180_010--Hb_000130_430 Hb_176760_010 Hb_176760_010 Hb_163180_010--Hb_176760_010 Hb_000130_430--Hb_000330_010 Hb_000130_430--Hb_086639_110 Hb_000107_690 Hb_000107_690 Hb_000130_430--Hb_000107_690 Hb_001926_060--Hb_007058_020 Hb_001926_060--Hb_176760_010 Hb_001926_060--Hb_000130_430 Hb_007058_020--Hb_176760_010 Hb_007058_020--Hb_001136_150 Hb_007058_020--Hb_000130_430 Hb_000330_010--Hb_086639_110 Hb_000330_010--Hb_000107_690 Hb_003251_020 Hb_003251_020 Hb_000330_010--Hb_003251_020 Hb_158909_010 Hb_158909_010 Hb_000330_010--Hb_158909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.32059 5.07381 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis