Hb_001248_170

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1248: 173303-176539
Sequence    

Annotation

kegg
ID rcu:RCOM_1292200
description Disease resistance protein RGA2, putative (EC:3.1.3.16)
nr
ID XP_002526758.1
description Disease resistance protein RGA2, putative [Ricinus communis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID B9SL89
description Disease resistance protein RGA2, putative OS=Ricinus communis GN=RCOM_1292200 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07529: 173744-174479 , PASA_asmbl_07530: 174822-175195 , PASA_asmbl_07532: 175531-176225 , PASA_asmbl_07533: 176362-176855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_170 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
2 Hb_007007_090 0.0883898455 - - phospholipase d beta, putative [Ricinus communis]
3 Hb_008040_060 0.0891769134 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
4 Hb_002370_060 0.0915834466 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Populus euphratica]
5 Hb_000976_340 0.093648546 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_006573_280 0.0945236644 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
7 Hb_002529_080 0.0971700674 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
8 Hb_001515_030 0.1062122369 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_004166_020 0.1065110402 - - -
10 Hb_000589_330 0.1082980551 - - kinase, putative [Ricinus communis]
11 Hb_014361_020 0.1114275073 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
12 Hb_004837_110 0.1119364486 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
13 Hb_000054_140 0.1135444667 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
14 Hb_000094_010 0.1175203869 - - lrr receptor protein kinase, putative [Ricinus communis]
15 Hb_000000_070 0.1196534964 - - allene oxide synthase [Hevea brasiliensis]
16 Hb_005784_020 0.1208714736 - - Protein MKS1, putative [Ricinus communis]
17 Hb_000116_290 0.1212387865 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
18 Hb_167272_010 0.1220031297 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
19 Hb_002097_210 0.123978462 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002375_080 0.1244800155 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001248_170 Hb_001248_170 Hb_007007_090 Hb_007007_090 Hb_001248_170--Hb_007007_090 Hb_008040_060 Hb_008040_060 Hb_001248_170--Hb_008040_060 Hb_002370_060 Hb_002370_060 Hb_001248_170--Hb_002370_060 Hb_000976_340 Hb_000976_340 Hb_001248_170--Hb_000976_340 Hb_006573_280 Hb_006573_280 Hb_001248_170--Hb_006573_280 Hb_002529_080 Hb_002529_080 Hb_001248_170--Hb_002529_080 Hb_002375_080 Hb_002375_080 Hb_007007_090--Hb_002375_080 Hb_001677_120 Hb_001677_120 Hb_007007_090--Hb_001677_120 Hb_000589_330 Hb_000589_330 Hb_007007_090--Hb_000589_330 Hb_007007_090--Hb_006573_280 Hb_003562_040 Hb_003562_040 Hb_007007_090--Hb_003562_040 Hb_008040_060--Hb_002529_080 Hb_003914_050 Hb_003914_050 Hb_008040_060--Hb_003914_050 Hb_000027_060 Hb_000027_060 Hb_008040_060--Hb_000027_060 Hb_000000_070 Hb_000000_070 Hb_008040_060--Hb_000000_070 Hb_008667_030 Hb_008667_030 Hb_008040_060--Hb_008667_030 Hb_000054_140 Hb_000054_140 Hb_002370_060--Hb_000054_140 Hb_177215_020 Hb_177215_020 Hb_002370_060--Hb_177215_020 Hb_000836_220 Hb_000836_220 Hb_002370_060--Hb_000836_220 Hb_002370_060--Hb_006573_280 Hb_001198_160 Hb_001198_160 Hb_002370_060--Hb_001198_160 Hb_000116_290 Hb_000116_290 Hb_000976_340--Hb_000116_290 Hb_000094_010 Hb_000094_010 Hb_000976_340--Hb_000094_010 Hb_005784_020 Hb_005784_020 Hb_000976_340--Hb_005784_020 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_006573_280--Hb_000054_140 Hb_006573_280--Hb_001677_120 Hb_004112_050 Hb_004112_050 Hb_006573_280--Hb_004112_050 Hb_006573_280--Hb_000836_220 Hb_002529_080--Hb_008667_030 Hb_002529_080--Hb_000094_010 Hb_002529_080--Hb_000000_070 Hb_000098_250 Hb_000098_250 Hb_002529_080--Hb_000098_250 Hb_002529_080--Hb_003914_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.42116 2.13004 3.4145 0 0.0157583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.78729 1.80026

CAGE analysis