Hb_001248_180

Information

Type -
Description -
Location Contig1248: 176560-178746
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07532: 175531-176225 , PASA_asmbl_07533: 176362-176855 , PASA_asmbl_07534: 177284-178574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001248_180 0.0 - - -
2 Hb_081228_010 0.075222794 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
3 Hb_009411_030 0.1264398645 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]
4 Hb_000628_060 0.1285788652 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
5 Hb_008066_020 0.1329515585 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004474_020 0.1413472273 - - aldo-keto reductase, putative [Ricinus communis]
7 Hb_010926_020 0.1449427595 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
8 Hb_057018_010 0.1491498642 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
9 Hb_000224_020 0.1496396906 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
10 Hb_004899_380 0.1526138123 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001006_130 0.1535238623 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
12 Hb_072670_010 0.1573614994 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
13 Hb_008406_050 0.1599229506 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 2 [Jatropha curcas]
14 Hb_033772_040 0.1619472891 - - conserved hypothetical protein [Ricinus communis]
15 Hb_048987_020 0.1647204351 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
16 Hb_034310_020 0.1662155825 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Jatropha curcas]
17 Hb_002894_020 0.1675968256 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
18 Hb_005736_010 0.1680714567 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
19 Hb_087314_010 0.1789676943 - - -
20 Hb_151027_010 0.1803074291 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]

Gene co-expression network

sample Hb_001248_180 Hb_001248_180 Hb_081228_010 Hb_081228_010 Hb_001248_180--Hb_081228_010 Hb_009411_030 Hb_009411_030 Hb_001248_180--Hb_009411_030 Hb_000628_060 Hb_000628_060 Hb_001248_180--Hb_000628_060 Hb_008066_020 Hb_008066_020 Hb_001248_180--Hb_008066_020 Hb_004474_020 Hb_004474_020 Hb_001248_180--Hb_004474_020 Hb_010926_020 Hb_010926_020 Hb_001248_180--Hb_010926_020 Hb_004899_380 Hb_004899_380 Hb_081228_010--Hb_004899_380 Hb_081228_010--Hb_000628_060 Hb_081228_010--Hb_004474_020 Hb_048987_020 Hb_048987_020 Hb_081228_010--Hb_048987_020 Hb_001006_130 Hb_001006_130 Hb_081228_010--Hb_001006_130 Hb_009411_030--Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_009411_030--Hb_057018_010 Hb_008196_010 Hb_008196_010 Hb_009411_030--Hb_008196_010 Hb_009411_030--Hb_081228_010 Hb_045786_010 Hb_045786_010 Hb_009411_030--Hb_045786_010 Hb_003777_150 Hb_003777_150 Hb_000628_060--Hb_003777_150 Hb_000579_210 Hb_000579_210 Hb_000628_060--Hb_000579_210 Hb_000628_060--Hb_004474_020 Hb_084304_010 Hb_084304_010 Hb_000628_060--Hb_084304_010 Hb_004970_100 Hb_004970_100 Hb_000628_060--Hb_004970_100 Hb_004319_100 Hb_004319_100 Hb_008066_020--Hb_004319_100 Hb_033772_040 Hb_033772_040 Hb_008066_020--Hb_033772_040 Hb_034310_020 Hb_034310_020 Hb_008066_020--Hb_034310_020 Hb_011609_200 Hb_011609_200 Hb_008066_020--Hb_011609_200 Hb_007426_100 Hb_007426_100 Hb_008066_020--Hb_007426_100 Hb_004474_020--Hb_004899_380 Hb_000224_020 Hb_000224_020 Hb_004474_020--Hb_000224_020 Hb_004474_020--Hb_034310_020 Hb_004474_020--Hb_048987_020 Hb_004474_020--Hb_003777_150 Hb_008406_050 Hb_008406_050 Hb_004474_020--Hb_008406_050 Hb_010926_020--Hb_057018_010 Hb_072670_010 Hb_072670_010 Hb_010926_020--Hb_072670_010 Hb_005736_010 Hb_005736_010 Hb_010926_020--Hb_005736_010 Hb_002511_050 Hb_002511_050 Hb_010926_020--Hb_002511_050 Hb_002894_020 Hb_002894_020 Hb_010926_020--Hb_002894_020 Hb_010926_020--Hb_000224_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.671688 0.731382 4.01037 0 0.193912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.172018 0

CAGE analysis