Hb_001250_030

Information

Type -
Description -
Location Contig1250: 18773-19312
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07629: 15708-29668 , PASA_asmbl_07632: 19051-19478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_093388_010 0.0925223272 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_029510_060 0.113187424 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
4 Hb_023738_010 0.1149435567 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
5 Hb_003311_020 0.1153520892 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003414_040 0.1161228086 - - hypothetical protein VITISV_016691 [Vitis vinifera]
7 Hb_000432_020 0.1175559249 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
8 Hb_004899_210 0.1253285704 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]
9 Hb_001383_080 0.1268809033 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
10 Hb_003994_070 0.1289961042 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_003900_040 0.1322061218 - - hypothetical protein [Lotus japonicus]
12 Hb_002598_030 0.1333798548 - - -
13 Hb_144838_010 0.137369335 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
14 Hb_017640_010 0.1423522598 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
15 Hb_001542_010 0.1428820528 - - hypothetical protein, partial [Pseudomonas fluorescens]
16 Hb_003169_040 0.1449292563 - - -
17 Hb_007575_010 0.1457788461 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
18 Hb_147604_010 0.1505027226 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
19 Hb_012796_030 0.1521671807 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
20 Hb_000346_050 0.1529890253 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001250_030 Hb_001250_030 Hb_093388_010 Hb_093388_010 Hb_001250_030--Hb_093388_010 Hb_029510_060 Hb_029510_060 Hb_001250_030--Hb_029510_060 Hb_023738_010 Hb_023738_010 Hb_001250_030--Hb_023738_010 Hb_003311_020 Hb_003311_020 Hb_001250_030--Hb_003311_020 Hb_003414_040 Hb_003414_040 Hb_001250_030--Hb_003414_040 Hb_000432_020 Hb_000432_020 Hb_001250_030--Hb_000432_020 Hb_093388_010--Hb_029510_060 Hb_093388_010--Hb_023738_010 Hb_093388_010--Hb_000432_020 Hb_093388_010--Hb_003414_040 Hb_005678_030 Hb_005678_030 Hb_093388_010--Hb_005678_030 Hb_029510_060--Hb_023738_010 Hb_119832_010 Hb_119832_010 Hb_029510_060--Hb_119832_010 Hb_000951_070 Hb_000951_070 Hb_029510_060--Hb_000951_070 Hb_003796_010 Hb_003796_010 Hb_029510_060--Hb_003796_010 Hb_004374_090 Hb_004374_090 Hb_023738_010--Hb_004374_090 Hb_003302_010 Hb_003302_010 Hb_023738_010--Hb_003302_010 Hb_000441_080 Hb_000441_080 Hb_023738_010--Hb_000441_080 Hb_003994_070 Hb_003994_070 Hb_003311_020--Hb_003994_070 Hb_000567_270 Hb_000567_270 Hb_003311_020--Hb_000567_270 Hb_032016_010 Hb_032016_010 Hb_003311_020--Hb_032016_010 Hb_009851_090 Hb_009851_090 Hb_003311_020--Hb_009851_090 Hb_007533_050 Hb_007533_050 Hb_003311_020--Hb_007533_050 Hb_003311_020--Hb_000432_020 Hb_003414_040--Hb_000432_020 Hb_001383_080 Hb_001383_080 Hb_003414_040--Hb_001383_080 Hb_003414_040--Hb_003311_020 Hb_001793_040 Hb_001793_040 Hb_003414_040--Hb_001793_040 Hb_000432_020--Hb_007533_050 Hb_151401_010 Hb_151401_010 Hb_000432_020--Hb_151401_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.55675 0.124524 0.168154 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.307942 3.18671

CAGE analysis