Hb_001250_050

Information

Type -
Description -
Location Contig1250: 31219-37126
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05250g
description POPTRDRAFT_230624; hypothetical protein
nr
ID XP_012085425.1
description PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRU2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17775 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07636: 31422-36995 , PASA_asmbl_07637: 33479-33704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_050 0.0 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
2 Hb_003777_030 0.0533254903 - - Exocyst complex component, putative [Ricinus communis]
3 Hb_002687_180 0.0612305984 - - PREDICTED: phytochrome-associated serine/threonine-protein phosphatase [Jatropha curcas]
4 Hb_001279_190 0.062916398 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X1 [Jatropha curcas]
5 Hb_000753_160 0.0682426932 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
6 Hb_002739_120 0.068485757 - - PREDICTED: zinc finger protein ZPR1-like [Jatropha curcas]
7 Hb_008289_040 0.0714108714 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
8 Hb_002304_050 0.0756365354 - - pyruvate kinase, putative [Ricinus communis]
9 Hb_002045_170 0.0761794019 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
10 Hb_000665_170 0.0766905118 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
11 Hb_002552_040 0.0784707749 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
12 Hb_001085_080 0.079446136 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
13 Hb_006120_050 0.0819530989 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
14 Hb_003209_130 0.0820357726 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_000703_330 0.0822154468 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000256_230 0.0831013254 - - PREDICTED: uncharacterized protein LOC105637594 [Jatropha curcas]
17 Hb_001677_200 0.0840520319 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013726_050 0.0842019326 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
19 Hb_002740_080 0.0844407088 - - flap endonuclease-1, putative [Ricinus communis]
20 Hb_000815_300 0.0845914994 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001250_050 Hb_001250_050 Hb_003777_030 Hb_003777_030 Hb_001250_050--Hb_003777_030 Hb_002687_180 Hb_002687_180 Hb_001250_050--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_001250_050--Hb_001279_190 Hb_000753_160 Hb_000753_160 Hb_001250_050--Hb_000753_160 Hb_002739_120 Hb_002739_120 Hb_001250_050--Hb_002739_120 Hb_008289_040 Hb_008289_040 Hb_001250_050--Hb_008289_040 Hb_000665_170 Hb_000665_170 Hb_003777_030--Hb_000665_170 Hb_007545_010 Hb_007545_010 Hb_003777_030--Hb_007545_010 Hb_132082_010 Hb_132082_010 Hb_003777_030--Hb_132082_010 Hb_000815_300 Hb_000815_300 Hb_003777_030--Hb_000815_300 Hb_000256_230 Hb_000256_230 Hb_003777_030--Hb_000256_230 Hb_002687_180--Hb_001279_190 Hb_004228_120 Hb_004228_120 Hb_002687_180--Hb_004228_120 Hb_002304_050 Hb_002304_050 Hb_002687_180--Hb_002304_050 Hb_002552_040 Hb_002552_040 Hb_002687_180--Hb_002552_040 Hb_005741_040 Hb_005741_040 Hb_002687_180--Hb_005741_040 Hb_007483_070 Hb_007483_070 Hb_001279_190--Hb_007483_070 Hb_001279_190--Hb_004228_120 Hb_011716_010 Hb_011716_010 Hb_001279_190--Hb_011716_010 Hb_001227_120 Hb_001227_120 Hb_001279_190--Hb_001227_120 Hb_000753_160--Hb_002304_050 Hb_007919_110 Hb_007919_110 Hb_000753_160--Hb_007919_110 Hb_003449_100 Hb_003449_100 Hb_000753_160--Hb_003449_100 Hb_000753_160--Hb_002687_180 Hb_000753_160--Hb_001279_190 Hb_001085_080 Hb_001085_080 Hb_002739_120--Hb_001085_080 Hb_002739_120--Hb_003777_030 Hb_000418_020 Hb_000418_020 Hb_002739_120--Hb_000418_020 Hb_000197_180 Hb_000197_180 Hb_002739_120--Hb_000197_180 Hb_001009_150 Hb_001009_150 Hb_002739_120--Hb_001009_150 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.17411 13.2006 18.5445 23.5934 6.94659 7.13631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.0996 6.65463 5.39345 13.269 12.33

CAGE analysis