Hb_001250_090

Information

Type -
Description -
Location Contig1250: 74091-79880
Sequence    

Annotation

kegg
ID tcc:TCM_010430
description Nsp-interacting kinase 3 isoform 1
nr
ID XP_012085434.1
description PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
swissprot
ID Q93ZS4
description Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1
trembl
ID A0A067JRP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17779 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein nsp-interacting kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07641: 74762-79835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_090 0.0 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
2 Hb_009898_040 0.1355732613 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002486_080 0.140668539 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
4 Hb_010390_010 0.1406960718 - - casein kinase, putative [Ricinus communis]
5 Hb_000035_390 0.1420239919 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
6 Hb_002615_150 0.1447428122 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
7 Hb_000648_050 0.1452989482 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
8 Hb_007416_070 0.1463683697 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
9 Hb_000017_260 0.1464143467 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
10 Hb_001301_280 0.1474634054 - - conserved hypothetical protein [Ricinus communis]
11 Hb_185830_060 0.1492569347 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
12 Hb_001486_040 0.1496101208 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
13 Hb_066842_010 0.1514301789 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
14 Hb_000008_340 0.1518675058 - - PREDICTED: aquaporin PIP2-4 [Jatropha curcas]
15 Hb_002093_060 0.1531693339 - - phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_001951_150 0.1533800007 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
17 Hb_000601_040 0.1535543996 - - PREDICTED: E3 ubiquitin-protein ligase BOI-like [Jatropha curcas]
18 Hb_000046_170 0.1545665125 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
19 Hb_001900_100 0.1558000955 - - PREDICTED: uncharacterized protein LOC105632664 isoform X1 [Jatropha curcas]
20 Hb_004607_070 0.1559961172 - - integral membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001250_090 Hb_001250_090 Hb_009898_040 Hb_009898_040 Hb_001250_090--Hb_009898_040 Hb_002486_080 Hb_002486_080 Hb_001250_090--Hb_002486_080 Hb_010390_010 Hb_010390_010 Hb_001250_090--Hb_010390_010 Hb_000035_390 Hb_000035_390 Hb_001250_090--Hb_000035_390 Hb_002615_150 Hb_002615_150 Hb_001250_090--Hb_002615_150 Hb_000648_050 Hb_000648_050 Hb_001250_090--Hb_000648_050 Hb_001946_310 Hb_001946_310 Hb_009898_040--Hb_001946_310 Hb_000402_130 Hb_000402_130 Hb_009898_040--Hb_000402_130 Hb_000889_010 Hb_000889_010 Hb_009898_040--Hb_000889_010 Hb_066842_010 Hb_066842_010 Hb_009898_040--Hb_066842_010 Hb_000025_190 Hb_000025_190 Hb_009898_040--Hb_000025_190 Hb_000975_350 Hb_000975_350 Hb_009898_040--Hb_000975_350 Hb_001301_280 Hb_001301_280 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_000465_150 Hb_000465_150 Hb_002486_080--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_001571_060 Hb_001571_060 Hb_002486_080--Hb_001571_060 Hb_000494_030 Hb_000494_030 Hb_010390_010--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_010390_010--Hb_004030_060 Hb_000683_050 Hb_000683_050 Hb_010390_010--Hb_000683_050 Hb_005016_010 Hb_005016_010 Hb_010390_010--Hb_005016_010 Hb_001473_170 Hb_001473_170 Hb_010390_010--Hb_001473_170 Hb_010390_010--Hb_007416_070 Hb_132880_040 Hb_132880_040 Hb_000035_390--Hb_132880_040 Hb_005648_010 Hb_005648_010 Hb_000035_390--Hb_005648_010 Hb_000185_220 Hb_000185_220 Hb_000035_390--Hb_000185_220 Hb_004607_070 Hb_004607_070 Hb_000035_390--Hb_004607_070 Hb_000046_170 Hb_000046_170 Hb_000035_390--Hb_000046_170 Hb_000367_090 Hb_000367_090 Hb_000035_390--Hb_000367_090 Hb_172426_030 Hb_172426_030 Hb_002615_150--Hb_172426_030 Hb_000029_140 Hb_000029_140 Hb_002615_150--Hb_000029_140 Hb_003531_070 Hb_003531_070 Hb_002615_150--Hb_003531_070 Hb_001141_420 Hb_001141_420 Hb_002615_150--Hb_001141_420 Hb_000580_120 Hb_000580_120 Hb_002615_150--Hb_000580_120 Hb_003058_120 Hb_003058_120 Hb_002615_150--Hb_003058_120 Hb_000270_180 Hb_000270_180 Hb_000648_050--Hb_000270_180 Hb_007590_090 Hb_007590_090 Hb_000648_050--Hb_007590_090 Hb_000648_050--Hb_002486_080 Hb_000017_260 Hb_000017_260 Hb_000648_050--Hb_000017_260 Hb_001817_100 Hb_001817_100 Hb_000648_050--Hb_001817_100 Hb_000009_520 Hb_000009_520 Hb_000648_050--Hb_000009_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10844 3.77977 5.61794 10.7806 1.15325 1.84916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.25175 1.98124 2.36731 7.72124 7.78373

CAGE analysis