Hb_001250_120

Information

Type -
Description -
Location Contig1250: 119067-123881
Sequence    

Annotation

kegg
ID vvi:100246480
description homeobox protein knotted-1-like 6
nr
ID XP_012085436.1
description PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
swissprot
ID Q84JS6
description Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1
trembl
ID A0A067JUW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17781 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07643: 105842-122902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_120 0.0 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
2 Hb_001250_110 0.1767543955 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
3 Hb_054649_020 0.2176861611 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
4 Hb_000014_140 0.237840233 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
5 Hb_001565_120 0.254105194 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
6 Hb_000813_080 0.2541313334 - - caspase, putative [Ricinus communis]
7 Hb_167316_010 0.2587520342 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
8 Hb_008453_070 0.262909192 - - putative aquaporin [Vitis vinifera]
9 Hb_001529_030 0.2646507419 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
10 Hb_050495_010 0.2697902209 - - heat-shock protein, putative [Ricinus communis]
11 Hb_097433_020 0.2742711769 - - ATP-binding cassette transporter, putative [Ricinus communis]
12 Hb_002641_100 0.277584627 - - PREDICTED: uncharacterized protein LOC105115446 [Populus euphratica]
13 Hb_000188_030 0.2840225687 - - carboxylic ester hydrolase, putative [Ricinus communis]
14 Hb_012760_180 0.2852348029 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
15 Hb_000579_150 0.2886736028 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
16 Hb_057217_010 0.2893260892 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
17 Hb_131956_010 0.3009785697 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
18 Hb_084611_010 0.3028707398 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
19 Hb_000334_200 0.3034142997 desease resistance Gene Name: RVT_1 PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_001277_140 0.3091547002 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]

Gene co-expression network

sample Hb_001250_120 Hb_001250_120 Hb_001250_110 Hb_001250_110 Hb_001250_120--Hb_001250_110 Hb_054649_020 Hb_054649_020 Hb_001250_120--Hb_054649_020 Hb_000014_140 Hb_000014_140 Hb_001250_120--Hb_000014_140 Hb_001565_120 Hb_001565_120 Hb_001250_120--Hb_001565_120 Hb_000813_080 Hb_000813_080 Hb_001250_120--Hb_000813_080 Hb_167316_010 Hb_167316_010 Hb_001250_120--Hb_167316_010 Hb_008453_070 Hb_008453_070 Hb_001250_110--Hb_008453_070 Hb_000849_110 Hb_000849_110 Hb_001250_110--Hb_000849_110 Hb_084611_010 Hb_084611_010 Hb_001250_110--Hb_084611_010 Hb_000117_170 Hb_000117_170 Hb_001250_110--Hb_000117_170 Hb_126907_010 Hb_126907_010 Hb_001250_110--Hb_126907_010 Hb_054649_020--Hb_000813_080 Hb_017651_010 Hb_017651_010 Hb_054649_020--Hb_017651_010 Hb_054649_020--Hb_167316_010 Hb_000579_150 Hb_000579_150 Hb_054649_020--Hb_000579_150 Hb_097433_020 Hb_097433_020 Hb_054649_020--Hb_097433_020 Hb_000014_140--Hb_008453_070 Hb_005389_010 Hb_005389_010 Hb_000014_140--Hb_005389_010 Hb_189237_010 Hb_189237_010 Hb_000014_140--Hb_189237_010 Hb_050495_010 Hb_050495_010 Hb_000014_140--Hb_050495_010 Hb_000014_140--Hb_001250_110 Hb_090459_010 Hb_090459_010 Hb_001565_120--Hb_090459_010 Hb_127819_010 Hb_127819_010 Hb_001565_120--Hb_127819_010 Hb_116685_010 Hb_116685_010 Hb_001565_120--Hb_116685_010 Hb_012760_180 Hb_012760_180 Hb_001565_120--Hb_012760_180 Hb_000960_010 Hb_000960_010 Hb_001565_120--Hb_000960_010 Hb_011885_010 Hb_011885_010 Hb_001565_120--Hb_011885_010 Hb_001529_030 Hb_001529_030 Hb_000813_080--Hb_001529_030 Hb_000813_080--Hb_127819_010 Hb_022534_020 Hb_022534_020 Hb_000813_080--Hb_022534_020 Hb_125981_010 Hb_125981_010 Hb_000813_080--Hb_125981_010 Hb_007292_030 Hb_007292_030 Hb_000813_080--Hb_007292_030 Hb_167316_010--Hb_050495_010 Hb_007978_020 Hb_007978_020 Hb_167316_010--Hb_007978_020 Hb_000062_500 Hb_000062_500 Hb_167316_010--Hb_000062_500 Hb_004939_020 Hb_004939_020 Hb_167316_010--Hb_004939_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45138 11.5936 0 0 0.145502 2.53959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0692396 0 0.762774 0

CAGE analysis