Hb_001250_130

Information

Type -
Description -
Location Contig1250: 152896-155291
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19280g
description POPTRDRAFT_420703; hypothetical protein
nr
ID XP_002312683.2
description hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
swissprot
ID Q3ED65
description 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=MENG PE=1 SV=2
trembl
ID B9HLS4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s19280g PE=3 SV=2
Gene Ontology
ID GO:0052624
description 2-phytyl- -beta-naphthoquinone chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07644: 153578-153744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001250_130 0.0 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
2 Hb_001408_170 0.1493324333 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
3 Hb_000622_170 0.1528763354 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
4 Hb_017439_010 0.1613043993 - - putative actin-97 protein [Linum usitatissimum]
5 Hb_014508_010 0.1718877927 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
6 Hb_000417_090 0.1720774792 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
7 Hb_000328_010 0.1734121592 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
8 Hb_001268_160 0.1761987325 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
9 Hb_008053_030 0.1789457169 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
10 Hb_000991_030 0.1829195869 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
11 Hb_004046_060 0.1886120847 - - PREDICTED: protein CDI [Jatropha curcas]
12 Hb_000956_050 0.1902443791 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
13 Hb_006570_040 0.1950710624 - - hypothetical protein CICLE_v10002683mg [Citrus clementina]
14 Hb_010889_010 0.1955468568 - - PREDICTED: myosin-12 [Jatropha curcas]
15 Hb_004052_100 0.1991711226 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
16 Hb_005946_020 0.1992026269 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
17 Hb_001401_040 0.1992692881 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
18 Hb_000740_150 0.2005033576 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
19 Hb_010381_100 0.2025125909 - - Phospholipase D epsilon [Morus notabilis]
20 Hb_032568_010 0.2026178714 - - PREDICTED: protein phosphatase 2C 56-like [Jatropha curcas]

Gene co-expression network

sample Hb_001250_130 Hb_001250_130 Hb_001408_170 Hb_001408_170 Hb_001250_130--Hb_001408_170 Hb_000622_170 Hb_000622_170 Hb_001250_130--Hb_000622_170 Hb_017439_010 Hb_017439_010 Hb_001250_130--Hb_017439_010 Hb_014508_010 Hb_014508_010 Hb_001250_130--Hb_014508_010 Hb_000417_090 Hb_000417_090 Hb_001250_130--Hb_000417_090 Hb_000328_010 Hb_000328_010 Hb_001250_130--Hb_000328_010 Hb_004052_100 Hb_004052_100 Hb_001408_170--Hb_004052_100 Hb_001268_160 Hb_001268_160 Hb_001408_170--Hb_001268_160 Hb_001401_040 Hb_001401_040 Hb_001408_170--Hb_001401_040 Hb_001377_530 Hb_001377_530 Hb_001408_170--Hb_001377_530 Hb_010381_040 Hb_010381_040 Hb_001408_170--Hb_010381_040 Hb_011174_040 Hb_011174_040 Hb_001408_170--Hb_011174_040 Hb_047659_010 Hb_047659_010 Hb_000622_170--Hb_047659_010 Hb_000991_030 Hb_000991_030 Hb_000622_170--Hb_000991_030 Hb_008053_030 Hb_008053_030 Hb_000622_170--Hb_008053_030 Hb_004117_090 Hb_004117_090 Hb_000622_170--Hb_004117_090 Hb_000622_170--Hb_000417_090 Hb_071674_010 Hb_071674_010 Hb_000622_170--Hb_071674_010 Hb_002498_030 Hb_002498_030 Hb_017439_010--Hb_002498_030 Hb_017439_010--Hb_001401_040 Hb_003055_090 Hb_003055_090 Hb_017439_010--Hb_003055_090 Hb_017439_010--Hb_001268_160 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_017439_010--Hb_000328_010 Hb_000740_150 Hb_000740_150 Hb_014508_010--Hb_000740_150 Hb_029977_020 Hb_029977_020 Hb_014508_010--Hb_029977_020 Hb_014508_010--Hb_004052_100 Hb_014508_010--Hb_001408_170 Hb_133799_010 Hb_133799_010 Hb_014508_010--Hb_133799_010 Hb_000072_230 Hb_000072_230 Hb_000417_090--Hb_000072_230 Hb_000107_360 Hb_000107_360 Hb_000417_090--Hb_000107_360 Hb_000190_170 Hb_000190_170 Hb_000417_090--Hb_000190_170 Hb_000417_090--Hb_004117_090 Hb_000331_170 Hb_000331_170 Hb_000417_090--Hb_000331_170 Hb_006153_160 Hb_006153_160 Hb_000328_010--Hb_006153_160 Hb_000193_340 Hb_000193_340 Hb_000328_010--Hb_000193_340 Hb_000328_010--Hb_002498_030 Hb_000086_210 Hb_000086_210 Hb_000328_010--Hb_000086_210 Hb_005144_120 Hb_005144_120 Hb_000328_010--Hb_005144_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.243158 1.68422 1.43959 0.0549881 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.127509 0.300536 0.170784 0.0415285 0.565687

CAGE analysis