Hb_001252_010

Information

Type -
Description -
Location Contig1252: 5101-10819
Sequence    

Annotation

kegg
ID rcu:RCOM_1481430
description Speckle-type POZ protein, putative
nr
ID KDP44889.1
description hypothetical protein JCGZ_01389 [Jatropha curcas]
swissprot
ID O22286
description BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana GN=BPM3 PE=1 SV=1
trembl
ID A0A067LKM3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01389 PE=4 SV=1
Gene Ontology
ID GO:0005829
description btb poz and math domain-containing protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07703: 9107-9594 , PASA_asmbl_07704: 5265-10776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_010 0.0 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
2 Hb_003609_030 0.065318102 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
3 Hb_001595_030 0.0701112755 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
4 Hb_008803_090 0.074025912 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
5 Hb_000125_170 0.0755821367 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
6 Hb_002027_260 0.0756783274 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
7 Hb_005532_050 0.0759271025 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_002163_030 0.0769532011 - - PREDICTED: serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform [Jatropha curcas]
9 Hb_001677_210 0.0771148076 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
10 Hb_005993_020 0.0783363486 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
11 Hb_011671_430 0.0793463645 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
12 Hb_003464_050 0.0812428741 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
13 Hb_000179_030 0.0819489635 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
14 Hb_036790_100 0.0822825999 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
15 Hb_006586_050 0.0825076616 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
16 Hb_002603_120 0.0830913723 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
17 Hb_003052_140 0.0831149841 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
18 Hb_045793_010 0.0832447907 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
19 Hb_000562_090 0.0839146786 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
20 Hb_000336_250 0.0843525166 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]

Gene co-expression network

sample Hb_001252_010 Hb_001252_010 Hb_003609_030 Hb_003609_030 Hb_001252_010--Hb_003609_030 Hb_001595_030 Hb_001595_030 Hb_001252_010--Hb_001595_030 Hb_008803_090 Hb_008803_090 Hb_001252_010--Hb_008803_090 Hb_000125_170 Hb_000125_170 Hb_001252_010--Hb_000125_170 Hb_002027_260 Hb_002027_260 Hb_001252_010--Hb_002027_260 Hb_005532_050 Hb_005532_050 Hb_001252_010--Hb_005532_050 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_031527_020 Hb_031527_020 Hb_003609_030--Hb_031527_020 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_000879_200 Hb_000879_200 Hb_001595_030--Hb_000879_200 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_000327_120 Hb_000327_120 Hb_001595_030--Hb_000327_120 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_106552_050 Hb_106552_050 Hb_008803_090--Hb_106552_050 Hb_001926_030 Hb_001926_030 Hb_008803_090--Hb_001926_030 Hb_001635_170 Hb_001635_170 Hb_008803_090--Hb_001635_170 Hb_008803_090--Hb_001595_030 Hb_008803_090--Hb_005532_050 Hb_001677_210 Hb_001677_210 Hb_008803_090--Hb_001677_210 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_003052_140 Hb_003052_140 Hb_000125_170--Hb_003052_140 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_000373_150 Hb_000373_150 Hb_000125_170--Hb_000373_150 Hb_007416_180 Hb_007416_180 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_006400_040 Hb_006400_040 Hb_002027_260--Hb_006400_040 Hb_012634_010 Hb_012634_010 Hb_002027_260--Hb_012634_010 Hb_001623_420 Hb_001623_420 Hb_002027_260--Hb_001623_420 Hb_001728_100 Hb_001728_100 Hb_002027_260--Hb_001728_100 Hb_000236_100 Hb_000236_100 Hb_002027_260--Hb_000236_100 Hb_002375_020 Hb_002375_020 Hb_002027_260--Hb_002375_020 Hb_005532_050--Hb_003464_050 Hb_001680_010 Hb_001680_010 Hb_005532_050--Hb_001680_010 Hb_001301_200 Hb_001301_200 Hb_005532_050--Hb_001301_200 Hb_001797_050 Hb_001797_050 Hb_005532_050--Hb_001797_050 Hb_001541_020 Hb_001541_020 Hb_005532_050--Hb_001541_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.3239 33.2141 14.3332 18.9424 28.6356 40.9207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3428 28.4557 25.7929 19.4402 11.2077

CAGE analysis