Hb_001252_040

Information

Type -
Description -
Location Contig1252: 32702-36202
Sequence    

Annotation

kegg
ID rcu:RCOM_1481880
description kinase, putative
nr
ID XP_012091224.1
description PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
swissprot
ID Q9LZM4
description Wall-associated receptor kinase-like 20 OS=Arabidopsis thaliana GN=WAKL20 PE=2 SV=1
trembl
ID A0A067L8V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01386 PE=3 SV=1
Gene Ontology
ID GO:0004674
description wall-associated receptor kinase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07711: 32894-33192 , PASA_asmbl_07712: 33319-33552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_040 0.0 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
2 Hb_000521_300 0.0982079024 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
3 Hb_000086_370 0.1272300227 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
4 Hb_001514_210 0.1292658835 - - hypothetical protein VITISV_012133 [Vitis vinifera]
5 Hb_000579_180 0.1436523284 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
6 Hb_012753_200 0.1468593882 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
7 Hb_001623_470 0.1471726093 - - ammonium transporter, putative [Ricinus communis]
8 Hb_004574_010 0.1528735687 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
9 Hb_000085_230 0.1543460002 - - PREDICTED: probable long-chain-alcohol O-fatty-acyltransferase 5 [Jatropha curcas]
10 Hb_029508_030 0.1567190897 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
11 Hb_000010_200 0.1588868241 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_001675_130 0.1590940298 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein GLABRA 2 [Jatropha curcas]
13 Hb_001769_030 0.1611240737 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
14 Hb_000221_170 0.1614007534 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
15 Hb_182021_010 0.1629267093 - - sucrose transporter 4 [Hevea brasiliensis]
16 Hb_004195_170 0.1636473363 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002805_150 0.1645922272 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_003878_100 0.1650831703 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
19 Hb_000120_980 0.1668859894 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
20 Hb_000876_050 0.1691603397 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001252_040 Hb_001252_040 Hb_000521_300 Hb_000521_300 Hb_001252_040--Hb_000521_300 Hb_000086_370 Hb_000086_370 Hb_001252_040--Hb_000086_370 Hb_001514_210 Hb_001514_210 Hb_001252_040--Hb_001514_210 Hb_000579_180 Hb_000579_180 Hb_001252_040--Hb_000579_180 Hb_012753_200 Hb_012753_200 Hb_001252_040--Hb_012753_200 Hb_001623_470 Hb_001623_470 Hb_001252_040--Hb_001623_470 Hb_000521_300--Hb_000086_370 Hb_000088_160 Hb_000088_160 Hb_000521_300--Hb_000088_160 Hb_001373_010 Hb_001373_010 Hb_000521_300--Hb_001373_010 Hb_011214_140 Hb_011214_140 Hb_000521_300--Hb_011214_140 Hb_004195_190 Hb_004195_190 Hb_000521_300--Hb_004195_190 Hb_000657_030 Hb_000657_030 Hb_000086_370--Hb_000657_030 Hb_004195_170 Hb_004195_170 Hb_000086_370--Hb_004195_170 Hb_000120_980 Hb_000120_980 Hb_000086_370--Hb_000120_980 Hb_000589_180 Hb_000589_180 Hb_000086_370--Hb_000589_180 Hb_012807_060 Hb_012807_060 Hb_000086_370--Hb_012807_060 Hb_001514_210--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_001514_210--Hb_000085_230 Hb_001514_210--Hb_000579_180 Hb_002805_150 Hb_002805_150 Hb_001514_210--Hb_002805_150 Hb_002686_390 Hb_002686_390 Hb_001514_210--Hb_002686_390 Hb_003031_030 Hb_003031_030 Hb_001514_210--Hb_003031_030 Hb_000579_180--Hb_012753_200 Hb_003807_020 Hb_003807_020 Hb_000579_180--Hb_003807_020 Hb_000579_180--Hb_000085_230 Hb_010926_010 Hb_010926_010 Hb_000579_180--Hb_010926_010 Hb_000579_180--Hb_012807_060 Hb_001894_040 Hb_001894_040 Hb_000579_180--Hb_001894_040 Hb_012753_200--Hb_002805_150 Hb_012753_200--Hb_003807_020 Hb_002007_140 Hb_002007_140 Hb_012753_200--Hb_002007_140 Hb_012395_070 Hb_012395_070 Hb_012753_200--Hb_012395_070 Hb_001355_110 Hb_001355_110 Hb_001623_470--Hb_001355_110 Hb_001769_030 Hb_001769_030 Hb_001623_470--Hb_001769_030 Hb_000489_020 Hb_000489_020 Hb_001623_470--Hb_000489_020 Hb_005333_100 Hb_005333_100 Hb_001623_470--Hb_005333_100 Hb_001266_020 Hb_001266_020 Hb_001623_470--Hb_001266_020 Hb_000976_060 Hb_000976_060 Hb_001623_470--Hb_000976_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0201718 2.67644 0.456176 0.442714 0.126039 0.0856701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0541124 0.0683833 3.50959 0.685868

CAGE analysis