Hb_001252_100

Information

Type -
Description -
Location Contig1252: 91790-96934
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20610g
description POPTRDRAFT_822449; hypothetical protein
nr
ID XP_012088552.1
description PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
swissprot
ID Q945M8
description CASP-like protein 5B2 OS=Arabidopsis thaliana GN=At3g53850 PE=2 SV=1
trembl
ID A0A067L901
description CASP-like protein OS=Jatropha curcas GN=JCGZ_01382 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 5b2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07724: 91815-96875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_100 0.0 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
2 Hb_000299_040 0.070792667 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
3 Hb_033843_010 0.0732396051 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
4 Hb_148912_010 0.0792382059 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000690_080 0.0824689377 transcription factor TF Family: HB -
6 Hb_000107_050 0.0836767746 - - 60S ribosomal protein L9, putative [Ricinus communis]
7 Hb_001006_170 0.0857573492 - - Endonuclease V, putative [Ricinus communis]
8 Hb_003001_120 0.0871226401 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
9 Hb_007576_040 0.0875219213 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
10 Hb_002506_020 0.0891205653 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
11 Hb_003058_130 0.0891657535 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
12 Hb_000529_160 0.0902871062 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
13 Hb_000494_020 0.0907752452 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
14 Hb_000103_560 0.0912850296 - - ADP-ribosylation factor, putative [Ricinus communis]
15 Hb_002968_060 0.092451872 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
16 Hb_010436_070 0.093136669 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
17 Hb_000465_430 0.0952753868 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
18 Hb_000529_190 0.0959422939 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
19 Hb_007594_030 0.0962909614 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
20 Hb_063716_050 0.0964195888 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]

Gene co-expression network

sample Hb_001252_100 Hb_001252_100 Hb_000299_040 Hb_000299_040 Hb_001252_100--Hb_000299_040 Hb_033843_010 Hb_033843_010 Hb_001252_100--Hb_033843_010 Hb_148912_010 Hb_148912_010 Hb_001252_100--Hb_148912_010 Hb_000690_080 Hb_000690_080 Hb_001252_100--Hb_000690_080 Hb_000107_050 Hb_000107_050 Hb_001252_100--Hb_000107_050 Hb_001006_170 Hb_001006_170 Hb_001252_100--Hb_001006_170 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130 Hb_000465_430 Hb_000465_430 Hb_033843_010--Hb_000465_430 Hb_003502_080 Hb_003502_080 Hb_033843_010--Hb_003502_080 Hb_003058_130 Hb_003058_130 Hb_033843_010--Hb_003058_130 Hb_033843_010--Hb_001006_170 Hb_033153_050 Hb_033153_050 Hb_033843_010--Hb_033153_050 Hb_003392_040 Hb_003392_040 Hb_033843_010--Hb_003392_040 Hb_003038_030 Hb_003038_030 Hb_148912_010--Hb_003038_030 Hb_000172_370 Hb_000172_370 Hb_148912_010--Hb_000172_370 Hb_002411_170 Hb_002411_170 Hb_148912_010--Hb_002411_170 Hb_063716_050 Hb_063716_050 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_125000_010 Hb_125000_010 Hb_148912_010--Hb_125000_010 Hb_004944_010 Hb_004944_010 Hb_000690_080--Hb_004944_010 Hb_009767_120 Hb_009767_120 Hb_000690_080--Hb_009767_120 Hb_000977_130 Hb_000977_130 Hb_000690_080--Hb_000977_130 Hb_000690_080--Hb_000107_050 Hb_141131_010 Hb_141131_010 Hb_000690_080--Hb_141131_010 Hb_003874_020 Hb_003874_020 Hb_000690_080--Hb_003874_020 Hb_000933_180 Hb_000933_180 Hb_000107_050--Hb_000933_180 Hb_010128_130 Hb_010128_130 Hb_000107_050--Hb_010128_130 Hb_011794_090 Hb_011794_090 Hb_000107_050--Hb_011794_090 Hb_001741_140 Hb_001741_140 Hb_000107_050--Hb_001741_140 Hb_000494_020 Hb_000494_020 Hb_000107_050--Hb_000494_020 Hb_000017_120 Hb_000017_120 Hb_001006_170--Hb_000017_120 Hb_168707_030 Hb_168707_030 Hb_001006_170--Hb_168707_030 Hb_005503_030 Hb_005503_030 Hb_001006_170--Hb_005503_030 Hb_002149_020 Hb_002149_020 Hb_001006_170--Hb_002149_020 Hb_000000_080 Hb_000000_080 Hb_001006_170--Hb_000000_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.778 4.33832 11.9344 16.0953 24.6212 27.3687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6542 24.9705 19.9533 8.76197 6.89166

CAGE analysis