Hb_001252_110

Information

Type -
Description -
Location Contig1252: 97922-100893
Sequence    

Annotation

kegg
ID rcu:RCOM_1482340
description hypothetical protein
nr
ID XP_012088540.1
description PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8W487
description Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis thaliana GN=At2g39795 PE=2 SV=1
trembl
ID A0A067L8V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01381 PE=4 SV=1
Gene Ontology
ID GO:0005759
description mitochondrial glycoprotein family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07726: 98007-100809
cDNA
(Sanger)
(ID:Location)		 002_B08.ab1: 98004-100496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_110 0.0 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
2 Hb_002007_060 0.0643974263 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
3 Hb_002301_140 0.0741516255 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
4 Hb_001301_160 0.0748285891 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
5 Hb_023732_070 0.0774737622 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
6 Hb_000866_270 0.0774897808 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
7 Hb_001226_160 0.0777326524 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
8 Hb_001048_020 0.0797396298 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
9 Hb_006332_020 0.0807559374 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_000103_560 0.0815275227 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_002375_020 0.0823740113 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
12 Hb_001540_010 0.0830027736 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
13 Hb_000210_180 0.0849147232 - - PREDICTED: protein YLS9-like [Jatropha curcas]
14 Hb_003050_080 0.0864171509 - - 40S ribosomal protein S14, putative [Ricinus communis]
15 Hb_002868_010 0.0871384799 - - 60S ribosomal protein L30, putative [Ricinus communis]
16 Hb_011571_020 0.0872609582 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
17 Hb_012762_050 0.0873314767 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
18 Hb_002968_060 0.088153659 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
19 Hb_004931_090 0.0895259346 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
20 Hb_001138_050 0.0897165457 - - hypothetical protein JCGZ_15696 [Jatropha curcas]

Gene co-expression network

sample Hb_001252_110 Hb_001252_110 Hb_002007_060 Hb_002007_060 Hb_001252_110--Hb_002007_060 Hb_002301_140 Hb_002301_140 Hb_001252_110--Hb_002301_140 Hb_001301_160 Hb_001301_160 Hb_001252_110--Hb_001301_160 Hb_023732_070 Hb_023732_070 Hb_001252_110--Hb_023732_070 Hb_000866_270 Hb_000866_270 Hb_001252_110--Hb_000866_270 Hb_001226_160 Hb_001226_160 Hb_001252_110--Hb_001226_160 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_028995_040 Hb_028995_040 Hb_002301_140--Hb_028995_040 Hb_000200_100 Hb_000200_100 Hb_002301_140--Hb_000200_100 Hb_002301_140--Hb_023226_040 Hb_002301_140--Hb_002007_060 Hb_009773_020 Hb_009773_020 Hb_002301_140--Hb_009773_020 Hb_001235_190 Hb_001235_190 Hb_002301_140--Hb_001235_190 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_011571_020 Hb_011571_020 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_001824_070 Hb_001824_070 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070 Hb_000866_270--Hb_001259_090 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_000866_270--Hb_028995_040 Hb_000866_270--Hb_000661_250 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.3244 17.838 12.1058 13.6221 21.6693 34.8174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6021 54.8338 31.2726 15.399 8.21735

CAGE analysis