Hb_001252_120

Information

Type -
Description -
Location Contig1252: 101697-114372
Sequence    

Annotation

kegg
ID gmx:100816150
description delta-1-pyrroline-5-carboxylate synthase-like
nr
ID XP_012454204.1
description PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
swissprot
ID O04226
description Delta-1-pyrroline-5-carboxylate synthase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2
trembl
ID A0A0D2UYK4
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G269700 PE=4 SV=1
Gene Ontology
ID GO:0000166
description delta-1-pyrroline-5-carboxylate synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07727: 101692-114370 , PASA_asmbl_07729: 113627-114286 , PASA_asmbl_07730: 110226-110350 , PASA_asmbl_07731: 103549-103830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_120 0.0 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
2 Hb_000028_180 0.0466716318 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
3 Hb_008725_230 0.0611523568 - - PREDICTED: CTP synthase [Jatropha curcas]
4 Hb_000556_120 0.0641407468 - - Spastin, putative [Ricinus communis]
5 Hb_004324_130 0.0644237052 - - polypyrimidine tract binding protein, putative [Ricinus communis]
6 Hb_001584_120 0.0666862333 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
7 Hb_022115_020 0.0696530141 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
8 Hb_000603_150 0.0713795973 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
9 Hb_002232_410 0.0724461461 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
10 Hb_001157_090 0.0741588507 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
11 Hb_073973_100 0.0752024384 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
12 Hb_001635_090 0.0756800368 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
13 Hb_003376_330 0.0761585338 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
14 Hb_165928_030 0.0775583121 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002110_190 0.0797118836 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
16 Hb_023732_030 0.0800940606 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
17 Hb_005634_010 0.0805082794 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_010142_030 0.0809394102 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_003761_010 0.0818780688 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_007479_040 0.0820062365 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001252_120 Hb_001252_120 Hb_000028_180 Hb_000028_180 Hb_001252_120--Hb_000028_180 Hb_008725_230 Hb_008725_230 Hb_001252_120--Hb_008725_230 Hb_000556_120 Hb_000556_120 Hb_001252_120--Hb_000556_120 Hb_004324_130 Hb_004324_130 Hb_001252_120--Hb_004324_130 Hb_001584_120 Hb_001584_120 Hb_001252_120--Hb_001584_120 Hb_022115_020 Hb_022115_020 Hb_001252_120--Hb_022115_020 Hb_000028_180--Hb_004324_130 Hb_007479_040 Hb_007479_040 Hb_000028_180--Hb_007479_040 Hb_000028_180--Hb_022115_020 Hb_004724_150 Hb_004724_150 Hb_000028_180--Hb_004724_150 Hb_002481_080 Hb_002481_080 Hb_000028_180--Hb_002481_080 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_005634_010 Hb_005634_010 Hb_000556_120--Hb_005634_010 Hb_000329_060 Hb_000329_060 Hb_000556_120--Hb_000329_060 Hb_000140_290 Hb_000140_290 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_000556_120--Hb_004324_130 Hb_000181_400 Hb_000181_400 Hb_004324_130--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_004324_130--Hb_000111_290 Hb_004324_130--Hb_001876_050 Hb_007416_120 Hb_007416_120 Hb_004324_130--Hb_007416_120 Hb_006831_140 Hb_006831_140 Hb_004324_130--Hb_006831_140 Hb_001500_140 Hb_001500_140 Hb_001584_120--Hb_001500_140 Hb_001635_090 Hb_001635_090 Hb_001584_120--Hb_001635_090 Hb_000603_150 Hb_000603_150 Hb_001584_120--Hb_000603_150 Hb_000083_120 Hb_000083_120 Hb_001584_120--Hb_000083_120 Hb_028227_070 Hb_028227_070 Hb_001584_120--Hb_028227_070 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_155159_020 Hb_155159_020 Hb_022115_020--Hb_155159_020 Hb_002110_190 Hb_002110_190 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_022115_020--Hb_000603_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.9273 36.0102 34.1695 43.4734 30.9746 41.0176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.4248 32.3194 46.4544 52.0159 23.5604

CAGE analysis