Hb_001252_140

Information

Type -
Description -
Location Contig1252: 135128-137313
Sequence    

Annotation

kegg
ID rcu:RCOM_1482380
description catalytic, putative
nr
ID XP_002524233.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FGF0
description Phosphoglycerate mutase-like protein 1 OS=Arabidopsis thaliana GN=At5g64460 PE=2 SV=1
trembl
ID B9SE14
description Catalytic, putative OS=Ricinus communis GN=RCOM_1482380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07734: 135320-137294 , PASA_asmbl_07735: 135297-137294
cDNA
(Sanger)
(ID:Location)		 006_F04.ab1: 135320-136733 , 032_B16.ab1: 135297-137143 , 039_P07.ab1: 135387-136737

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_140 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001621_180 0.0724725337 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
3 Hb_004410_010 0.0972555308 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
4 Hb_007747_130 0.1065794316 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
5 Hb_006469_060 0.1142314278 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
6 Hb_001104_120 0.116716353 - - -
7 Hb_034585_040 0.1175668768 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
8 Hb_002660_160 0.1232251554 - - protein binding protein, putative [Ricinus communis]
9 Hb_005615_070 0.1235318731 - - Rab7 [Hevea brasiliensis]
10 Hb_000563_590 0.1240667368 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
11 Hb_007441_180 0.1271178517 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001266_050 0.1272962108 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
13 Hb_000526_020 0.1275101747 - - thioredoxin-like family protein [Hevea brasiliensis]
14 Hb_000161_050 0.1277762275 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002781_020 0.129456166 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
16 Hb_001123_120 0.1296017581 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
17 Hb_009252_130 0.1299325396 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
18 Hb_103752_010 0.1325569393 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
19 Hb_001198_030 0.133302387 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
20 Hb_000599_090 0.1335459476 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001252_140 Hb_001252_140 Hb_001621_180 Hb_001621_180 Hb_001252_140--Hb_001621_180 Hb_004410_010 Hb_004410_010 Hb_001252_140--Hb_004410_010 Hb_007747_130 Hb_007747_130 Hb_001252_140--Hb_007747_130 Hb_006469_060 Hb_006469_060 Hb_001252_140--Hb_006469_060 Hb_001104_120 Hb_001104_120 Hb_001252_140--Hb_001104_120 Hb_034585_040 Hb_034585_040 Hb_001252_140--Hb_034585_040 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_000563_590 Hb_000563_590 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001621_180--Hb_001104_120 Hb_004410_010--Hb_007747_130 Hb_002660_160 Hb_002660_160 Hb_004410_010--Hb_002660_160 Hb_004410_010--Hb_001104_120 Hb_116264_010 Hb_116264_010 Hb_004410_010--Hb_116264_010 Hb_000787_070 Hb_000787_070 Hb_004410_010--Hb_000787_070 Hb_000184_180 Hb_000184_180 Hb_007747_130--Hb_000184_180 Hb_115919_020 Hb_115919_020 Hb_007747_130--Hb_115919_020 Hb_007747_130--Hb_006469_060 Hb_007747_130--Hb_001621_180 Hb_000580_160 Hb_000580_160 Hb_006469_060--Hb_000580_160 Hb_006469_060--Hb_005615_070 Hb_006469_060--Hb_001621_180 Hb_012779_110 Hb_012779_110 Hb_006469_060--Hb_012779_110 Hb_001104_120--Hb_000563_590 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_001104_120--Hb_007441_180 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001454_330 Hb_001454_330 Hb_001104_120--Hb_001454_330 Hb_034585_040--Hb_000563_590 Hb_034585_040--Hb_001621_180 Hb_002781_020 Hb_002781_020 Hb_034585_040--Hb_002781_020 Hb_001123_120 Hb_001123_120 Hb_034585_040--Hb_001123_120 Hb_034585_040--Hb_009252_130 Hb_007021_020 Hb_007021_020 Hb_034585_040--Hb_007021_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2168 0.318958 1.33258 8.64161 34.4691 44.2234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.3014 124.66 45.1829 8.79298 3.58521

CAGE analysis