Hb_001252_160

Information

Type -
Description -
Location Contig1252: 151914-157133
Sequence    

Annotation

kegg
ID rcu:RCOM_1482390
description hypothetical protein
nr
ID XP_012088499.1
description PREDICTED: PRA1 family protein A3 [Jatropha curcas]
swissprot
ID Q8GWC3
description PRA1 family protein A2 OS=Arabidopsis thaliana GN=PRA1A2 PE=2 SV=1
trembl
ID A0A067LJN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01375 PE=4 SV=1
Gene Ontology
ID GO:0044765
description pra1 family protein a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07737: 154798-156431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_160 0.0 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
2 Hb_000603_200 0.086569437 - - PREDICTED: myosin-15 [Jatropha curcas]
3 Hb_003507_020 0.0948370259 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
4 Hb_000061_410 0.0968110751 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
5 Hb_002835_190 0.1048268763 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
6 Hb_000329_620 0.1100806602 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
7 Hb_003627_020 0.112341803 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
8 Hb_012654_020 0.1197077215 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003656_030 0.1211051031 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
10 Hb_000155_070 0.1236026937 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
11 Hb_007178_010 0.1255633353 - - pseudo-hevein [Hevea brasiliensis]
12 Hb_000483_370 0.125653755 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005730_020 0.1258960152 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
14 Hb_043637_010 0.126646718 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
15 Hb_029464_010 0.1294552812 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
16 Hb_000329_610 0.1304094685 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004126_010 0.1305263237 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
18 Hb_017134_040 0.1311708012 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
19 Hb_001846_080 0.1316799142 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
20 Hb_003913_100 0.1327989052 - - copper amine oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001252_160 Hb_001252_160 Hb_000603_200 Hb_000603_200 Hb_001252_160--Hb_000603_200 Hb_003507_020 Hb_003507_020 Hb_001252_160--Hb_003507_020 Hb_000061_410 Hb_000061_410 Hb_001252_160--Hb_000061_410 Hb_002835_190 Hb_002835_190 Hb_001252_160--Hb_002835_190 Hb_000329_620 Hb_000329_620 Hb_001252_160--Hb_000329_620 Hb_003627_020 Hb_003627_020 Hb_001252_160--Hb_003627_020 Hb_000483_370 Hb_000483_370 Hb_000603_200--Hb_000483_370 Hb_002989_080 Hb_002989_080 Hb_000603_200--Hb_002989_080 Hb_000603_200--Hb_003507_020 Hb_043637_010 Hb_043637_010 Hb_000603_200--Hb_043637_010 Hb_007178_010 Hb_007178_010 Hb_000603_200--Hb_007178_010 Hb_003507_020--Hb_043637_010 Hb_003507_020--Hb_003627_020 Hb_000853_370 Hb_000853_370 Hb_003507_020--Hb_000853_370 Hb_007810_040 Hb_007810_040 Hb_003507_020--Hb_007810_040 Hb_000155_070 Hb_000155_070 Hb_000061_410--Hb_000155_070 Hb_000061_410--Hb_003627_020 Hb_000061_410--Hb_003507_020 Hb_064201_010 Hb_064201_010 Hb_000061_410--Hb_064201_010 Hb_029464_010 Hb_029464_010 Hb_000061_410--Hb_029464_010 Hb_003913_100 Hb_003913_100 Hb_002835_190--Hb_003913_100 Hb_002835_190--Hb_000329_620 Hb_005496_060 Hb_005496_060 Hb_002835_190--Hb_005496_060 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_013479_020 Hb_013479_020 Hb_002835_190--Hb_013479_020 Hb_007158_030 Hb_007158_030 Hb_000329_620--Hb_007158_030 Hb_000329_620--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_000329_620--Hb_009193_130 Hb_005271_030 Hb_005271_030 Hb_000329_620--Hb_005271_030 Hb_004126_010 Hb_004126_010 Hb_003627_020--Hb_004126_010 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.45397 0.374975 0.0324354 0.0755315 10.5422 9.72449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.40113 3.14737 3.87042 0.418932 0

CAGE analysis