Hb_001252_220

Information

Type -
Description -
Location Contig1252: 307846-323675
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24380g
description POPTRDRAFT_415712; hypothetical protein
nr
ID XP_012080406.1
description PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
swissprot
ID P53259
description Rhomboid protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PCP1 PE=1 SV=1
trembl
ID A0A067K8N1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11744 PE=4 SV=1
Gene Ontology
ID GO:0016021
description rhomboid protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07758: 308118-312409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_220 0.0 - - PREDICTED: uncharacterized protein LOC105640647 [Jatropha curcas]
2 Hb_002260_010 0.0994869244 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
3 Hb_012022_140 0.1016629538 - - ADP,ATP carrier protein, putative [Ricinus communis]
4 Hb_004057_010 0.1024104918 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
5 Hb_024074_010 0.1029859206 - - PREDICTED: cytochrome c [Jatropha curcas]
6 Hb_000005_300 0.1176204751 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003020_150 0.1193563698 - - tropinone reductase, putative [Ricinus communis]
8 Hb_003462_160 0.1240856788 transcription factor TF Family: GNAT predicted protein [Arabidopsis lyrata subsp. lyrata]
9 Hb_001979_020 0.1251688614 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
10 Hb_001329_150 0.1256154118 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
11 Hb_000676_390 0.1274669935 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
12 Hb_007894_050 0.1288290004 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
13 Hb_002872_050 0.1309274421 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
14 Hb_005843_140 0.1316106885 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
15 Hb_001493_050 0.1326852871 - - PREDICTED: uncharacterized protein LOC105631312 [Jatropha curcas]
16 Hb_001373_060 0.1329621907 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
17 Hb_131181_010 0.1330468905 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
18 Hb_007037_020 0.1333186986 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
19 Hb_000056_070 0.1339230272 - - -
20 Hb_003050_280 0.1359754576 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]

Gene co-expression network

sample Hb_001252_220 Hb_001252_220 Hb_002260_010 Hb_002260_010 Hb_001252_220--Hb_002260_010 Hb_012022_140 Hb_012022_140 Hb_001252_220--Hb_012022_140 Hb_004057_010 Hb_004057_010 Hb_001252_220--Hb_004057_010 Hb_024074_010 Hb_024074_010 Hb_001252_220--Hb_024074_010 Hb_000005_300 Hb_000005_300 Hb_001252_220--Hb_000005_300 Hb_003020_150 Hb_003020_150 Hb_001252_220--Hb_003020_150 Hb_002260_010--Hb_024074_010 Hb_006256_030 Hb_006256_030 Hb_002260_010--Hb_006256_030 Hb_002260_010--Hb_003020_150 Hb_000731_190 Hb_000731_190 Hb_002260_010--Hb_000731_190 Hb_001493_050 Hb_001493_050 Hb_002260_010--Hb_001493_050 Hb_012022_140--Hb_000005_300 Hb_004089_020 Hb_004089_020 Hb_012022_140--Hb_004089_020 Hb_001373_060 Hb_001373_060 Hb_012022_140--Hb_001373_060 Hb_002232_060 Hb_002232_060 Hb_012022_140--Hb_002232_060 Hb_000676_310 Hb_000676_310 Hb_012022_140--Hb_000676_310 Hb_026053_020 Hb_026053_020 Hb_004057_010--Hb_026053_020 Hb_000676_390 Hb_000676_390 Hb_004057_010--Hb_000676_390 Hb_018133_020 Hb_018133_020 Hb_004057_010--Hb_018133_020 Hb_001726_040 Hb_001726_040 Hb_004057_010--Hb_001726_040 Hb_006198_070 Hb_006198_070 Hb_004057_010--Hb_006198_070 Hb_001329_150 Hb_001329_150 Hb_004057_010--Hb_001329_150 Hb_000302_140 Hb_000302_140 Hb_024074_010--Hb_000302_140 Hb_024074_010--Hb_000731_190 Hb_001053_140 Hb_001053_140 Hb_024074_010--Hb_001053_140 Hb_024074_010--Hb_004057_010 Hb_131181_010 Hb_131181_010 Hb_024074_010--Hb_131181_010 Hb_000005_300--Hb_001373_060 Hb_001979_020 Hb_001979_020 Hb_000005_300--Hb_001979_020 Hb_000215_330 Hb_000215_330 Hb_000005_300--Hb_000215_330 Hb_000739_140 Hb_000739_140 Hb_000005_300--Hb_000739_140 Hb_003020_150--Hb_001979_020 Hb_000163_050 Hb_000163_050 Hb_003020_150--Hb_000163_050 Hb_003020_150--Hb_002232_060 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003880_030 Hb_003880_030 Hb_003020_150--Hb_003880_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07387 1.17642 4.56391 2.27772 0.739052 0.829356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05255 9.35946 3.93442 1.72371 3.50442

CAGE analysis