Hb_001254_020

Information

Type -
Description -
Location Contig1254: 51330-52830
Sequence    

Annotation

kegg
ID pop:POPTR_0004s15320g
description putative oxidoreductase-like family protein
nr
ID XP_012072466.1
description PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
swissprot
ID Q43383
description 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2
trembl
ID A0A067KQ73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04895 PE=3 SV=1
Gene Ontology
ID GO:0005506
description flavonol synthase flavanone 3-hydroxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07803: 51330-52967
cDNA
(Sanger)
(ID:Location)		 008_I12.ab1: 51330-52165 , 016_H20.ab1: 51330-52168 , 032_P17.ab1: 51333-52089 , 034_B03.ab1: 51330-52460 , 034_L23.ab1: 51330-52462

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001254_020 0.0 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
2 Hb_000032_090 0.0783134722 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000418_060 0.0982063354 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
4 Hb_004393_030 0.1092400844 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
5 Hb_007007_030 0.1099976109 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000071_090 0.1109959011 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
7 Hb_001610_070 0.1118953554 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
8 Hb_002374_030 0.1119435685 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
9 Hb_000319_010 0.1124091778 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
10 Hb_010812_060 0.1145085793 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
11 Hb_011915_020 0.1173106116 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 6, chloroplastic-like [Jatropha curcas]
12 Hb_000985_140 0.117439809 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
13 Hb_003078_070 0.1187672006 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
14 Hb_008406_070 0.1218273097 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
15 Hb_001989_070 0.1239779067 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
16 Hb_033187_020 0.1241606687 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
17 Hb_002725_080 0.1248895308 - - protein phosphatase 2c, putative [Ricinus communis]
18 Hb_000047_010 0.1251891149 - - PREDICTED: expansin-like A1 [Jatropha curcas]
19 Hb_028928_020 0.1252774745 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
20 Hb_001366_390 0.1254714227 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]

Gene co-expression network

sample Hb_001254_020 Hb_001254_020 Hb_000032_090 Hb_000032_090 Hb_001254_020--Hb_000032_090 Hb_000418_060 Hb_000418_060 Hb_001254_020--Hb_000418_060 Hb_004393_030 Hb_004393_030 Hb_001254_020--Hb_004393_030 Hb_007007_030 Hb_007007_030 Hb_001254_020--Hb_007007_030 Hb_000071_090 Hb_000071_090 Hb_001254_020--Hb_000071_090 Hb_001610_070 Hb_001610_070 Hb_001254_020--Hb_001610_070 Hb_000032_090--Hb_004393_030 Hb_002374_030 Hb_002374_030 Hb_000032_090--Hb_002374_030 Hb_008810_030 Hb_008810_030 Hb_000032_090--Hb_008810_030 Hb_000985_140 Hb_000985_140 Hb_000032_090--Hb_000985_140 Hb_012799_040 Hb_012799_040 Hb_000032_090--Hb_012799_040 Hb_006002_020 Hb_006002_020 Hb_000418_060--Hb_006002_020 Hb_000047_010 Hb_000047_010 Hb_000418_060--Hb_000047_010 Hb_000319_010 Hb_000319_010 Hb_000418_060--Hb_000319_010 Hb_011915_020 Hb_011915_020 Hb_000418_060--Hb_011915_020 Hb_002783_130 Hb_002783_130 Hb_000418_060--Hb_002783_130 Hb_004393_030--Hb_008810_030 Hb_021254_020 Hb_021254_020 Hb_004393_030--Hb_021254_020 Hb_004393_030--Hb_000985_140 Hb_001660_130 Hb_001660_130 Hb_004393_030--Hb_001660_130 Hb_004393_030--Hb_007007_030 Hb_004112_050 Hb_004112_050 Hb_007007_030--Hb_004112_050 Hb_007007_030--Hb_000032_090 Hb_007007_030--Hb_000985_140 Hb_004724_300 Hb_004724_300 Hb_007007_030--Hb_004724_300 Hb_008406_070 Hb_008406_070 Hb_000071_090--Hb_008406_070 Hb_003078_070 Hb_003078_070 Hb_000071_090--Hb_003078_070 Hb_000071_090--Hb_002374_030 Hb_001769_120 Hb_001769_120 Hb_000071_090--Hb_001769_120 Hb_189208_060 Hb_189208_060 Hb_000071_090--Hb_189208_060 Hb_000071_090--Hb_000985_140 Hb_001198_160 Hb_001198_160 Hb_001610_070--Hb_001198_160 Hb_000028_330 Hb_000028_330 Hb_001610_070--Hb_000028_330 Hb_001610_070--Hb_011915_020 Hb_006736_040 Hb_006736_040 Hb_001610_070--Hb_006736_040 Hb_024650_010 Hb_024650_010 Hb_001610_070--Hb_024650_010 Hb_000836_220 Hb_000836_220 Hb_001610_070--Hb_000836_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.319613 46.5371 45.2863 39.6387 0.586446 0.792675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116819 0.336945 0 5.38343 20.197

CAGE analysis