Hb_001257_070

Information

Type -
Description -
Location Contig1257: 133850-135232
Sequence    

Annotation

kegg
ID rcu:RCOM_1282640
description Aspartic proteinase nepenthesin-2 precursor, putative
nr
ID XP_012075052.1
description PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID B9SD00
description Aspartic proteinase nepenthesin-2, putative OS=Ricinus communis GN=RCOM_1282640 PE=4 SV=1
Gene Ontology
ID GO:0005618
description aspartic proteinase nepenthesin-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07844: 133611-135034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_070 0.0 - - PREDICTED: aspartic proteinase nepenthesin-1-like [Jatropha curcas]
2 Hb_012395_040 0.0615002483 - - conserved hypothetical protein [Ricinus communis]
3 Hb_034420_010 0.0685611171 - - glutathione S-transferase [Caragana korshinskii]
4 Hb_005288_090 0.0689822669 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
5 Hb_008226_050 0.0817283953 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
6 Hb_005618_070 0.0850741426 - - PREDICTED: uncharacterized protein LOC105643318 [Jatropha curcas]
7 Hb_072620_010 0.0882479298 - - PREDICTED: receptor-like protein kinase 2 [Cucumis melo]
8 Hb_002928_150 0.0909225215 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
9 Hb_001541_140 0.0918956854 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
10 Hb_000116_050 0.0925296525 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
11 Hb_005914_100 0.0975781947 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002205_220 0.1002971908 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
13 Hb_000732_090 0.1015082548 - - cyclin d, putative [Ricinus communis]
14 Hb_000130_400 0.1025984189 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
15 Hb_000060_030 0.1030447717 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
16 Hb_000340_550 0.1036859925 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
17 Hb_001279_110 0.1057613558 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
18 Hb_059832_010 0.1063062696 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
19 Hb_002045_160 0.1067884172 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
20 Hb_001969_120 0.1072493203 - - PREDICTED: plectin [Jatropha curcas]

Gene co-expression network

sample Hb_001257_070 Hb_001257_070 Hb_012395_040 Hb_012395_040 Hb_001257_070--Hb_012395_040 Hb_034420_010 Hb_034420_010 Hb_001257_070--Hb_034420_010 Hb_005288_090 Hb_005288_090 Hb_001257_070--Hb_005288_090 Hb_008226_050 Hb_008226_050 Hb_001257_070--Hb_008226_050 Hb_005618_070 Hb_005618_070 Hb_001257_070--Hb_005618_070 Hb_072620_010 Hb_072620_010 Hb_001257_070--Hb_072620_010 Hb_000116_050 Hb_000116_050 Hb_012395_040--Hb_000116_050 Hb_001279_110 Hb_001279_110 Hb_012395_040--Hb_001279_110 Hb_012395_040--Hb_005618_070 Hb_000060_030 Hb_000060_030 Hb_012395_040--Hb_000060_030 Hb_012395_040--Hb_005288_090 Hb_000134_300 Hb_000134_300 Hb_034420_010--Hb_000134_300 Hb_034420_010--Hb_012395_040 Hb_000802_070 Hb_000802_070 Hb_034420_010--Hb_000802_070 Hb_000671_020 Hb_000671_020 Hb_034420_010--Hb_000671_020 Hb_000394_120 Hb_000394_120 Hb_034420_010--Hb_000394_120 Hb_000340_550 Hb_000340_550 Hb_005288_090--Hb_000340_550 Hb_005288_090--Hb_000060_030 Hb_005288_090--Hb_005618_070 Hb_005288_090--Hb_000116_050 Hb_000675_130 Hb_000675_130 Hb_008226_050--Hb_000675_130 Hb_003641_040 Hb_003641_040 Hb_008226_050--Hb_003641_040 Hb_002205_220 Hb_002205_220 Hb_008226_050--Hb_002205_220 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400 Hb_001969_120 Hb_001969_120 Hb_005618_070--Hb_001969_120 Hb_005618_070--Hb_001279_110 Hb_002928_150 Hb_002928_150 Hb_005618_070--Hb_002928_150 Hb_001541_140 Hb_001541_140 Hb_005618_070--Hb_001541_140 Hb_000073_040 Hb_000073_040 Hb_072620_010--Hb_000073_040 Hb_000258_400 Hb_000258_400 Hb_072620_010--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_072620_010--Hb_072952_010 Hb_072620_010--Hb_000671_020 Hb_002045_160 Hb_002045_160 Hb_072620_010--Hb_002045_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0150479 0.0449896 20.7584 9.08785 0.028189 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0269913 0 0.485395 2.02556

CAGE analysis