Hb_001257_140

Information

Type -
Description -
Location Contig1257: 182411-183033
Sequence    

Annotation

kegg
ID tcc:TCM_041318
description Gb:AAF02129.1, putative
nr
ID XP_007015728.1
description Gb:AAF02129.1, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GVZ4
description Gb:AAF02129.1, putative OS=Theobroma cacao GN=TCM_041318 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07856: 182537-183036 , PASA_asmbl_07857: 182794-183013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_140 0.0 - - Gb:AAF02129.1, putative [Theobroma cacao]
2 Hb_005144_150 0.063233113 - - hypothetical protein VITISV_013572 [Vitis vinifera]
3 Hb_003849_170 0.0643676756 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
4 Hb_000352_360 0.0682143945 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
5 Hb_010863_020 0.0690763769 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
6 Hb_170077_020 0.0816757723 - - PREDICTED: probable serine incorporator [Jatropha curcas]
7 Hb_003858_070 0.0837345311 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
8 Hb_000344_030 0.0890102178 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
9 Hb_008731_010 0.0899384157 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
10 Hb_000813_020 0.0935127098 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
11 Hb_002616_020 0.0936976012 - - PREDICTED: peroxidase 3 [Jatropha curcas]
12 Hb_019299_020 0.1034285101 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
13 Hb_013399_060 0.1085916258 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
14 Hb_000163_170 0.1090438691 - - -
15 Hb_001006_300 0.1102367805 - - lipid binding protein, putative [Ricinus communis]
16 Hb_002869_090 0.1107513968 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
17 Hb_000327_100 0.1116522512 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
18 Hb_002014_130 0.1150678628 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003607_080 0.1176138036 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
20 Hb_007403_100 0.1195871032 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_001257_140 Hb_001257_140 Hb_005144_150 Hb_005144_150 Hb_001257_140--Hb_005144_150 Hb_003849_170 Hb_003849_170 Hb_001257_140--Hb_003849_170 Hb_000352_360 Hb_000352_360 Hb_001257_140--Hb_000352_360 Hb_010863_020 Hb_010863_020 Hb_001257_140--Hb_010863_020 Hb_170077_020 Hb_170077_020 Hb_001257_140--Hb_170077_020 Hb_003858_070 Hb_003858_070 Hb_001257_140--Hb_003858_070 Hb_005144_150--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_005144_150--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_005144_150--Hb_017061_010 Hb_005144_150--Hb_003849_170 Hb_001898_030 Hb_001898_030 Hb_005144_150--Hb_001898_030 Hb_003849_170--Hb_170077_020 Hb_005648_020 Hb_005648_020 Hb_003849_170--Hb_005648_020 Hb_002616_020 Hb_002616_020 Hb_003849_170--Hb_002616_020 Hb_003849_170--Hb_000352_360 Hb_000352_360--Hb_002616_020 Hb_002869_090 Hb_002869_090 Hb_000352_360--Hb_002869_090 Hb_000352_360--Hb_170077_020 Hb_000327_100 Hb_000327_100 Hb_000352_360--Hb_000327_100 Hb_013399_060 Hb_013399_060 Hb_010863_020--Hb_013399_060 Hb_010863_020--Hb_003858_070 Hb_001296_010 Hb_001296_010 Hb_010863_020--Hb_001296_010 Hb_011344_050 Hb_011344_050 Hb_010863_020--Hb_011344_050 Hb_010863_020--Hb_001006_300 Hb_000813_020 Hb_000813_020 Hb_170077_020--Hb_000813_020 Hb_170077_020--Hb_005648_020 Hb_003607_080 Hb_003607_080 Hb_170077_020--Hb_003607_080 Hb_003858_070--Hb_001006_300 Hb_003858_070--Hb_017061_010 Hb_003858_070--Hb_013399_060 Hb_180088_010 Hb_180088_010 Hb_003858_070--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148719 3.57678 7.04516 57.9925 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.1984 7.4301

CAGE analysis