Hb_001257_150

Information

Type -
Description -
Location Contig1257: 188798-199340
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001257_150 0.0 - - -
2 Hb_014870_010 0.2149012907 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
3 Hb_001935_050 0.2155517764 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
4 Hb_000084_270 0.217408443 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
5 Hb_000864_040 0.2181675256 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000186_020 0.2186653874 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
7 Hb_000189_610 0.2190108586 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
8 Hb_001543_010 0.2192521435 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010904_020 0.2205694191 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
10 Hb_124540_010 0.2211158573 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
11 Hb_007676_090 0.2262524216 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
12 Hb_003428_020 0.2276526024 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
13 Hb_000037_210 0.2285177114 - - -
14 Hb_009083_060 0.228805342 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
15 Hb_002571_110 0.2293984534 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
16 Hb_099335_020 0.2311936313 - - hypothetical protein ARALYDRAFT_905869 [Arabidopsis lyrata subsp. lyrata]
17 Hb_000032_120 0.2318036422 - - Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase [Glycine soja]
18 Hb_001068_060 0.2319031454 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
19 Hb_000877_010 0.2328918638 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
20 Hb_007761_040 0.2418732649 - - carbonyl reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001257_150 Hb_001257_150 Hb_014870_010 Hb_014870_010 Hb_001257_150--Hb_014870_010 Hb_001935_050 Hb_001935_050 Hb_001257_150--Hb_001935_050 Hb_000084_270 Hb_000084_270 Hb_001257_150--Hb_000084_270 Hb_000864_040 Hb_000864_040 Hb_001257_150--Hb_000864_040 Hb_000186_020 Hb_000186_020 Hb_001257_150--Hb_000186_020 Hb_000189_610 Hb_000189_610 Hb_001257_150--Hb_000189_610 Hb_014870_010--Hb_000084_270 Hb_014870_010--Hb_000186_020 Hb_014870_010--Hb_001935_050 Hb_014870_010--Hb_000864_040 Hb_014870_010--Hb_000189_610 Hb_007676_090 Hb_007676_090 Hb_014870_010--Hb_007676_090 Hb_001935_050--Hb_000864_040 Hb_001935_050--Hb_000189_610 Hb_001543_010 Hb_001543_010 Hb_001935_050--Hb_001543_010 Hb_010904_020 Hb_010904_020 Hb_001935_050--Hb_010904_020 Hb_124540_010 Hb_124540_010 Hb_001935_050--Hb_124540_010 Hb_000084_270--Hb_000186_020 Hb_000084_270--Hb_007676_090 Hb_003428_020 Hb_003428_020 Hb_000084_270--Hb_003428_020 Hb_000037_210 Hb_000037_210 Hb_000084_270--Hb_000037_210 Hb_009083_060 Hb_009083_060 Hb_000084_270--Hb_009083_060 Hb_000864_040--Hb_000189_610 Hb_000864_040--Hb_001543_010 Hb_000864_040--Hb_010904_020 Hb_000864_040--Hb_124540_010 Hb_099335_020 Hb_099335_020 Hb_000864_040--Hb_099335_020 Hb_000186_020--Hb_007676_090 Hb_000186_020--Hb_003428_020 Hb_000186_020--Hb_000037_210 Hb_000186_020--Hb_009083_060 Hb_000189_610--Hb_001543_010 Hb_000189_610--Hb_010904_020 Hb_000189_610--Hb_124540_010 Hb_000189_610--Hb_099335_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.226898 0 0 0.0363296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.144933

CAGE analysis