Hb_001258_030

Information

Type -
Description -
Location Contig1258: 51822-57217
Sequence    

Annotation

kegg
ID rcu:RCOM_0188130
description tRNA-dihydrouridine synthase, putative
nr
ID XP_002528905.1
description tRNA-dihydrouridine synthase, putative [Ricinus communis]
swissprot
ID Q9NX74
description tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2 PE=1 SV=1
trembl
ID B9SSD6
description tRNA-dihydrouridine synthase OS=Ricinus communis GN=RCOM_0188130 PE=3 SV=1
Gene Ontology
ID GO:0017150
description trna-dihydrouridine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_030 0.0 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
2 Hb_086639_040 0.1015170104 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
3 Hb_009382_010 0.1026236176 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
4 Hb_005237_050 0.1164238894 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
5 Hb_000352_270 0.1174082718 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
6 Hb_000836_530 0.1203360761 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
7 Hb_082609_010 0.1210315453 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
8 Hb_003020_220 0.1219207157 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
9 Hb_000227_120 0.1221030242 - - conserved hypothetical protein [Ricinus communis]
10 Hb_070256_010 0.1269452567 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
11 Hb_013405_030 0.1313531878 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001671_010 0.1322419336 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
13 Hb_003142_020 0.1329548895 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
14 Hb_001898_160 0.133895743 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
15 Hb_000143_030 0.1344258496 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_000574_390 0.134572722 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
17 Hb_001318_270 0.1350077415 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
18 Hb_005496_130 0.1354603936 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
19 Hb_005539_360 0.1355563708 - - kinesin light chain, putative [Ricinus communis]
20 Hb_003688_150 0.1357100242 - - glycine-rich RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001258_030 Hb_001258_030 Hb_086639_040 Hb_086639_040 Hb_001258_030--Hb_086639_040 Hb_009382_010 Hb_009382_010 Hb_001258_030--Hb_009382_010 Hb_005237_050 Hb_005237_050 Hb_001258_030--Hb_005237_050 Hb_000352_270 Hb_000352_270 Hb_001258_030--Hb_000352_270 Hb_000836_530 Hb_000836_530 Hb_001258_030--Hb_000836_530 Hb_082609_010 Hb_082609_010 Hb_001258_030--Hb_082609_010 Hb_000574_390 Hb_000574_390 Hb_086639_040--Hb_000574_390 Hb_000707_050 Hb_000707_050 Hb_086639_040--Hb_000707_050 Hb_000631_080 Hb_000631_080 Hb_086639_040--Hb_000631_080 Hb_005496_130 Hb_005496_130 Hb_086639_040--Hb_005496_130 Hb_003688_150 Hb_003688_150 Hb_086639_040--Hb_003688_150 Hb_103118_010 Hb_103118_010 Hb_086639_040--Hb_103118_010 Hb_000603_110 Hb_000603_110 Hb_009382_010--Hb_000603_110 Hb_004800_080 Hb_004800_080 Hb_009382_010--Hb_004800_080 Hb_002725_120 Hb_002725_120 Hb_009382_010--Hb_002725_120 Hb_000227_120 Hb_000227_120 Hb_009382_010--Hb_000227_120 Hb_000291_050 Hb_000291_050 Hb_009382_010--Hb_000291_050 Hb_008554_130 Hb_008554_130 Hb_009382_010--Hb_008554_130 Hb_003020_220 Hb_003020_220 Hb_005237_050--Hb_003020_220 Hb_006420_050 Hb_006420_050 Hb_005237_050--Hb_006420_050 Hb_001049_110 Hb_001049_110 Hb_005237_050--Hb_001049_110 Hb_005116_050 Hb_005116_050 Hb_005237_050--Hb_005116_050 Hb_005237_050--Hb_082609_010 Hb_018133_090 Hb_018133_090 Hb_005237_050--Hb_018133_090 Hb_000352_270--Hb_003020_220 Hb_000352_270--Hb_082609_010 Hb_007317_200 Hb_007317_200 Hb_000352_270--Hb_007317_200 Hb_000352_270--Hb_002725_120 Hb_000614_220 Hb_000614_220 Hb_000352_270--Hb_000614_220 Hb_001318_270 Hb_001318_270 Hb_000352_270--Hb_001318_270 Hb_002791_010 Hb_002791_010 Hb_000836_530--Hb_002791_010 Hb_000865_060 Hb_000865_060 Hb_000836_530--Hb_000865_060 Hb_001500_040 Hb_001500_040 Hb_000836_530--Hb_001500_040 Hb_000836_530--Hb_000574_390 Hb_007632_220 Hb_007632_220 Hb_000836_530--Hb_007632_220 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_082609_010--Hb_000614_220 Hb_082609_010--Hb_003020_220 Hb_001898_160 Hb_001898_160 Hb_082609_010--Hb_001898_160 Hb_082609_010--Hb_103118_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.40253 3.08836 1.69461 0.555487 4.39369 2.79011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.32322 6.04974 6.6473 3.66352 6.5419

CAGE analysis