Hb_001258_060

Information

Type -
Description -
Location Contig1258: 80716-85851
Sequence    

Annotation

kegg
ID rcu:RCOM_0188120
description Phosphoenolpyruvate carboxykinase [ATP], putative (EC:4.1.1.49)
nr
ID XP_012079510.1
description PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
swissprot
ID Q9T074
description Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1
trembl
ID A0A067K7R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12613 PE=3 SV=1
Gene Ontology
ID GO:0004612
description phosphoenolpyruvate carboxykinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07884: 80754-83920 , PASA_asmbl_07886: 84097-85794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_060 0.0 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
2 Hb_014894_010 0.1254735988 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
3 Hb_004242_190 0.1332862542 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_008864_090 0.160941261 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
5 Hb_001246_030 0.1610212923 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
6 Hb_000805_320 0.1648023413 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
7 Hb_007763_030 0.1765023658 - - PREDICTED: uncharacterized protein LOC105638154 [Jatropha curcas]
8 Hb_000005_250 0.1769928228 - - conserved hypothetical protein [Ricinus communis]
9 Hb_119494_010 0.1831981474 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
10 Hb_010480_030 0.1835066662 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
11 Hb_003073_180 0.1863571449 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
12 Hb_002407_080 0.1863998521 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
13 Hb_039145_010 0.1930047693 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_003647_030 0.1947572809 - - PREDICTED: probable glutathione S-transferase [Populus euphratica]
15 Hb_181600_010 0.1951744681 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
16 Hb_000497_110 0.1956953932 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
17 Hb_094437_060 0.1963313298 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
18 Hb_002027_140 0.2016495824 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
19 Hb_001332_040 0.2017458588 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
20 Hb_009687_010 0.2040618693 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_001258_060 Hb_001258_060 Hb_014894_010 Hb_014894_010 Hb_001258_060--Hb_014894_010 Hb_004242_190 Hb_004242_190 Hb_001258_060--Hb_004242_190 Hb_008864_090 Hb_008864_090 Hb_001258_060--Hb_008864_090 Hb_001246_030 Hb_001246_030 Hb_001258_060--Hb_001246_030 Hb_000805_320 Hb_000805_320 Hb_001258_060--Hb_000805_320 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030 Hb_014894_010--Hb_001246_030 Hb_119494_010 Hb_119494_010 Hb_014894_010--Hb_119494_010 Hb_002005_100 Hb_002005_100 Hb_014894_010--Hb_002005_100 Hb_004079_080 Hb_004079_080 Hb_014894_010--Hb_004079_080 Hb_014894_010--Hb_008864_090 Hb_028872_060 Hb_028872_060 Hb_004242_190--Hb_028872_060 Hb_004242_190--Hb_000805_320 Hb_006816_200 Hb_006816_200 Hb_004242_190--Hb_006816_200 Hb_002407_080 Hb_002407_080 Hb_004242_190--Hb_002407_080 Hb_003120_030 Hb_003120_030 Hb_004242_190--Hb_003120_030 Hb_008864_090--Hb_119494_010 Hb_001427_070 Hb_001427_070 Hb_008864_090--Hb_001427_070 Hb_010029_020 Hb_010029_020 Hb_008864_090--Hb_010029_020 Hb_077562_030 Hb_077562_030 Hb_008864_090--Hb_077562_030 Hb_008147_070 Hb_008147_070 Hb_008864_090--Hb_008147_070 Hb_001157_110 Hb_001157_110 Hb_001246_030--Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001246_030--Hb_000497_110 Hb_098315_080 Hb_098315_080 Hb_001246_030--Hb_098315_080 Hb_001246_030--Hb_119494_010 Hb_001246_030--Hb_002005_100 Hb_094437_060 Hb_094437_060 Hb_000805_320--Hb_094437_060 Hb_105602_010 Hb_105602_010 Hb_000805_320--Hb_105602_010 Hb_003073_180 Hb_003073_180 Hb_000805_320--Hb_003073_180 Hb_000805_320--Hb_014894_010 Hb_007763_030--Hb_001246_030 Hb_007763_030--Hb_014894_010 Hb_007763_030--Hb_000497_110 Hb_000742_110 Hb_000742_110 Hb_007763_030--Hb_000742_110 Hb_181600_010 Hb_181600_010 Hb_007763_030--Hb_181600_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.9957 11.0509 8.6668 8.03984 15.2394 24.0901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.3449 27.2623 39.7773 109.504 9.67231

CAGE analysis