Hb_001258_080

Information

Type -
Description -
Location Contig1258: 87064-89406
Sequence    

Annotation

kegg
ID rcu:RCOM_0188110
description hypothetical protein
nr
ID XP_012079509.1
description PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12612 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_080 0.0 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
2 Hb_002539_090 0.0721954437 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
3 Hb_000046_110 0.0764246394 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
4 Hb_001811_020 0.0802523811 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001718_100 0.0826600181 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
6 Hb_001173_040 0.083808813 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_001829_060 0.0838642183 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
8 Hb_000751_130 0.0867640958 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
9 Hb_002028_130 0.0870788712 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
10 Hb_001109_020 0.0927064007 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001437_230 0.0952622054 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
12 Hb_003927_130 0.095676213 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
13 Hb_001862_100 0.0980769878 - - PREDICTED: uncharacterized protein LOC105639799 isoform X2 [Jatropha curcas]
14 Hb_008173_120 0.1002101891 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000787_140 0.1006565599 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
16 Hb_001357_080 0.100960583 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
17 Hb_000172_030 0.1016976857 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
18 Hb_000089_160 0.1022481166 - - 60S ribosomal protein L5B [Hevea brasiliensis]
19 Hb_001427_120 0.1026945937 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
20 Hb_011139_020 0.1035551226 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001258_080 Hb_001258_080 Hb_002539_090 Hb_002539_090 Hb_001258_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001258_080--Hb_000046_110 Hb_001811_020 Hb_001811_020 Hb_001258_080--Hb_001811_020 Hb_001718_100 Hb_001718_100 Hb_001258_080--Hb_001718_100 Hb_001173_040 Hb_001173_040 Hb_001258_080--Hb_001173_040 Hb_001829_060 Hb_001829_060 Hb_001258_080--Hb_001829_060 Hb_000751_130 Hb_000751_130 Hb_002539_090--Hb_000751_130 Hb_002539_090--Hb_001173_040 Hb_007594_090 Hb_007594_090 Hb_002539_090--Hb_007594_090 Hb_001357_080 Hb_001357_080 Hb_002539_090--Hb_001357_080 Hb_000172_030 Hb_000172_030 Hb_002539_090--Hb_000172_030 Hb_001109_020 Hb_001109_020 Hb_000046_110--Hb_001109_020 Hb_000046_110--Hb_001829_060 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_003927_130 Hb_003927_130 Hb_000046_110--Hb_003927_130 Hb_000099_200 Hb_000099_200 Hb_001811_020--Hb_000099_200 Hb_000029_020 Hb_000029_020 Hb_001811_020--Hb_000029_020 Hb_000205_270 Hb_000205_270 Hb_001811_020--Hb_000205_270 Hb_000115_330 Hb_000115_330 Hb_001811_020--Hb_000115_330 Hb_183086_060 Hb_183086_060 Hb_001811_020--Hb_183086_060 Hb_001427_120 Hb_001427_120 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_001718_100--Hb_002078_450 Hb_000086_570 Hb_000086_570 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_002028_130 Hb_002028_130 Hb_001173_040--Hb_002028_130 Hb_001173_040--Hb_000172_030 Hb_001173_040--Hb_000751_130 Hb_001008_010 Hb_001008_010 Hb_001173_040--Hb_001008_010 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_001829_060--Hb_000751_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28051 0.359069 0.746464 1.95106 3.98453 7.29183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3245 9.29337 7.75249 2.29443 1.01246

CAGE analysis