Hb_001258_100

Information

Type -
Description -
Location Contig1258: 98228-110349
Sequence    

Annotation

kegg
ID pop:POPTR_0007s14460g
description POPTRDRAFT_1083906; hypothetical protein
nr
ID XP_012079506.1
description PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
swissprot
ID Q0WVX5
description Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1
trembl
ID A0A067KK04
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12610 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable starch synthase chloroplastic amyloplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07894: 98419-98602 , PASA_asmbl_07895: 99052-106907 , PASA_asmbl_07896: 108195-110364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_100 0.0 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
2 Hb_002893_040 0.0719327108 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
3 Hb_003912_040 0.075808625 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]
4 Hb_001225_030 0.081250939 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
5 Hb_002413_010 0.0833058871 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_003096_060 0.0840320852 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
7 Hb_007062_040 0.0864233061 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
8 Hb_000787_150 0.0867532996 - - PREDICTED: protein NDR1-like [Jatropha curcas]
9 Hb_000645_170 0.088686732 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000205_130 0.0903483552 - - calcium ion binding protein, putative [Ricinus communis]
11 Hb_002477_250 0.0906859451 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
12 Hb_000069_130 0.0909682374 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
13 Hb_002965_040 0.0920039786 - - drought-responsive family protein [Populus trichocarpa]
14 Hb_002811_040 0.0925697821 - - 5'->3' exoribonuclease, putative [Ricinus communis]
15 Hb_000445_470 0.0933245596 - - PREDICTED: RING finger and transmembrane domain-containing protein 1-like [Jatropha curcas]
16 Hb_000358_230 0.0935007685 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
17 Hb_001951_200 0.0941566718 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_000227_270 0.0965312133 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
19 Hb_001241_010 0.0974407126 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000866_450 0.0977716737 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001258_100 Hb_001258_100 Hb_002893_040 Hb_002893_040 Hb_001258_100--Hb_002893_040 Hb_003912_040 Hb_003912_040 Hb_001258_100--Hb_003912_040 Hb_001225_030 Hb_001225_030 Hb_001258_100--Hb_001225_030 Hb_002413_010 Hb_002413_010 Hb_001258_100--Hb_002413_010 Hb_003096_060 Hb_003096_060 Hb_001258_100--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_001258_100--Hb_007062_040 Hb_002893_040--Hb_002413_010 Hb_001951_200 Hb_001951_200 Hb_002893_040--Hb_001951_200 Hb_001776_210 Hb_001776_210 Hb_002893_040--Hb_001776_210 Hb_002092_120 Hb_002092_120 Hb_002893_040--Hb_002092_120 Hb_002572_020 Hb_002572_020 Hb_002893_040--Hb_002572_020 Hb_000069_130 Hb_000069_130 Hb_003912_040--Hb_000069_130 Hb_000046_570 Hb_000046_570 Hb_003912_040--Hb_000046_570 Hb_002492_010 Hb_002492_010 Hb_003912_040--Hb_002492_010 Hb_003912_040--Hb_007062_040 Hb_008226_090 Hb_008226_090 Hb_003912_040--Hb_008226_090 Hb_000120_910 Hb_000120_910 Hb_003912_040--Hb_000120_910 Hb_003682_030 Hb_003682_030 Hb_001225_030--Hb_003682_030 Hb_000375_290 Hb_000375_290 Hb_001225_030--Hb_000375_290 Hb_000645_170 Hb_000645_170 Hb_001225_030--Hb_000645_170 Hb_004870_050 Hb_004870_050 Hb_001225_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_001225_030--Hb_000094_090 Hb_001754_030 Hb_001754_030 Hb_001225_030--Hb_001754_030 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_027905_020 Hb_027905_020 Hb_002413_010--Hb_027905_020 Hb_002413_010--Hb_002572_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_002413_010--Hb_003912_040 Hb_008568_020 Hb_008568_020 Hb_003096_060--Hb_008568_020 Hb_154580_010 Hb_154580_010 Hb_003096_060--Hb_154580_010 Hb_001077_030 Hb_001077_030 Hb_003096_060--Hb_001077_030 Hb_000358_230 Hb_000358_230 Hb_003096_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_003096_060--Hb_000076_160 Hb_001135_120 Hb_001135_120 Hb_003096_060--Hb_001135_120 Hb_032990_010 Hb_032990_010 Hb_007062_040--Hb_032990_010 Hb_007062_040--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_007062_040--Hb_004586_060 Hb_001856_180 Hb_001856_180 Hb_007062_040--Hb_001856_180 Hb_001405_210 Hb_001405_210 Hb_007062_040--Hb_001405_210 Hb_005460_050 Hb_005460_050 Hb_007062_040--Hb_005460_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79452 6.77036 5.92258 5.09009 3.35944 3.75171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09517 3.08533 1.43815 2.76051 3.06138

CAGE analysis