Hb_001258_150

Information

Type -
Description -
Location Contig1258: 183466-186519
Sequence    

Annotation

kegg
ID rcu:RCOM_0188680
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_012079498.1
description PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
swissprot
ID Q9M2Z2
description COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana GN=WDR5A PE=1 SV=1
trembl
ID A0A067K7C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12607 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07902: 185998-186338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_150 0.0 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
2 Hb_001489_120 0.086525137 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
3 Hb_000803_060 0.1037282225 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
4 Hb_004032_310 0.1096762047 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
5 Hb_012725_040 0.1116424815 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
6 Hb_000071_140 0.1124942291 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
7 Hb_011360_090 0.1160759189 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_009040_010 0.1184437786 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
9 Hb_002534_050 0.1193199745 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
10 Hb_000069_730 0.1209812902 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X1 [Jatropha curcas]
11 Hb_001865_060 0.1212991277 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
12 Hb_056012_010 0.1222735209 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
13 Hb_006414_020 0.1261000243 transcription factor TF Family: MYB -
14 Hb_006111_030 0.1264133211 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
15 Hb_003038_010 0.1368519457 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_012787_040 0.1395249822 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
17 Hb_001662_170 0.1396682307 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
18 Hb_000186_200 0.1408511793 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
19 Hb_003494_060 0.1429136308 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
20 Hb_003752_120 0.1449186566 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001258_150 Hb_001258_150 Hb_001489_120 Hb_001489_120 Hb_001258_150--Hb_001489_120 Hb_000803_060 Hb_000803_060 Hb_001258_150--Hb_000803_060 Hb_004032_310 Hb_004032_310 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_000071_140 Hb_000071_140 Hb_001258_150--Hb_000071_140 Hb_011360_090 Hb_011360_090 Hb_001258_150--Hb_011360_090 Hb_001489_120--Hb_000071_140 Hb_001489_120--Hb_004032_310 Hb_001489_120--Hb_000803_060 Hb_002793_060 Hb_002793_060 Hb_001489_120--Hb_002793_060 Hb_006414_020 Hb_006414_020 Hb_001489_120--Hb_006414_020 Hb_012787_040 Hb_012787_040 Hb_000803_060--Hb_012787_040 Hb_000803_060--Hb_006414_020 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_000803_060--Hb_004032_310 Hb_004032_310--Hb_003752_120 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001662_170 Hb_001662_170 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_002915_070 Hb_002915_070 Hb_004032_310--Hb_002915_070 Hb_185513_010 Hb_185513_010 Hb_012725_040--Hb_185513_010 Hb_001865_060 Hb_001865_060 Hb_012725_040--Hb_001865_060 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_003494_060 Hb_003494_060 Hb_012725_040--Hb_003494_060 Hb_001141_360 Hb_001141_360 Hb_012725_040--Hb_001141_360 Hb_002534_050 Hb_002534_050 Hb_000071_140--Hb_002534_050 Hb_048755_020 Hb_048755_020 Hb_000071_140--Hb_048755_020 Hb_000069_730 Hb_000069_730 Hb_000071_140--Hb_000069_730 Hb_000071_140--Hb_004032_310 Hb_011360_090--Hb_012787_040 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_011360_090--Hb_001662_170 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_011360_090--Hb_000803_060 Hb_011360_090--Hb_006414_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09073 10.5211 2.83341 1.68647 1.34258 0.924065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.766596 0.361299 0.601467 0.959193 0.883659

CAGE analysis