Hb_001259_090

Information

Type -
Description -
Location Contig1259: 90553-92458
Sequence    

Annotation

kegg
ID rcu:RCOM_0679330
description hypothetical protein
nr
ID KJB28581.1
description hypothetical protein B456_005G056700 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2N8B4
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G056700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07917: 89369-89635 , PASA_asmbl_07918: 90540-92232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001259_090 0.0 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
2 Hb_000661_250 0.0360344426 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
3 Hb_000866_270 0.0522495068 - - PREDICTED: uncharacterized protein LOC105642993 [Jatropha curcas]
4 Hb_096563_010 0.0547568661 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
5 Hb_002007_060 0.0607394447 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
6 Hb_000059_330 0.0644462254 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
7 Hb_000656_400 0.0655570002 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
8 Hb_001138_050 0.0664998965 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
9 Hb_003010_030 0.0678576194 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
10 Hb_000462_140 0.0681610765 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
11 Hb_001635_170 0.0694789573 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
12 Hb_118707_030 0.0712943852 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
13 Hb_001552_020 0.0731409189 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
14 Hb_010661_030 0.0748018976 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
15 Hb_028995_040 0.0755515528 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
16 Hb_011689_080 0.0758126999 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
17 Hb_005993_040 0.0760121215 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
18 Hb_001301_160 0.0761431137 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
19 Hb_000000_160 0.0763288084 - - PREDICTED: membrin-11 [Jatropha curcas]
20 Hb_001571_040 0.0764784496 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]

Gene co-expression network

sample Hb_001259_090 Hb_001259_090 Hb_000661_250 Hb_000661_250 Hb_001259_090--Hb_000661_250 Hb_000866_270 Hb_000866_270 Hb_001259_090--Hb_000866_270 Hb_096563_010 Hb_096563_010 Hb_001259_090--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001259_090--Hb_002007_060 Hb_000059_330 Hb_000059_330 Hb_001259_090--Hb_000059_330 Hb_000656_400 Hb_000656_400 Hb_001259_090--Hb_000656_400 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_000661_250--Hb_002007_060 Hb_002233_150 Hb_002233_150 Hb_000661_250--Hb_002233_150 Hb_000866_270--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000866_270--Hb_023226_040 Hb_001159_140 Hb_001159_140 Hb_000866_270--Hb_001159_140 Hb_028995_040 Hb_028995_040 Hb_000866_270--Hb_028995_040 Hb_000866_270--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_002007_060--Hb_023226_040 Hb_002007_060--Hb_001301_160 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_003428_030 Hb_003428_030 Hb_000059_330--Hb_003428_030 Hb_003092_040 Hb_003092_040 Hb_000059_330--Hb_003092_040 Hb_024071_020 Hb_024071_020 Hb_000059_330--Hb_024071_020 Hb_004310_130 Hb_004310_130 Hb_000059_330--Hb_004310_130 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0599 10.58 7.67226 8.05433 17.9028 17.7844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6579 24.0849 12.6071 7.81787 7.08858

CAGE analysis