Hb_001259_100

Information

Type -
Description -
Location Contig1259: 97521-102879
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06280g
description chloride channel-like family protein
nr
ID XP_006381102.1
description chloride channel-like family protein [Populus trichocarpa]
swissprot
ID P60300
description Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=3 SV=2
trembl
ID U5G9F4
description Chloride channel protein OS=Populus trichocarpa GN=POPTR_0006s06280g PE=3 SV=1
Gene Ontology
ID GO:0016021
description chloride channel-like protein clc-g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07919: 98352-99536 , PASA_asmbl_07920: 100506-100964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001259_100 0.0 - - chloride channel-like family protein [Populus trichocarpa]
2 Hb_073171_010 0.1034776095 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
3 Hb_052764_080 0.120877889 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
4 Hb_005183_200 0.1335711642 - - EG964 [Manihot glaziovii]
5 Hb_000429_110 0.1348758799 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
6 Hb_004044_030 0.1351189403 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
7 Hb_010381_110 0.136642165 - - PRA1 family protein [Theobroma cacao]
8 Hb_022501_020 0.15397713 - - AMP dependent CoA ligase, putative [Ricinus communis]
9 Hb_001401_070 0.1633853552 - - glycogenin, putative [Ricinus communis]
10 Hb_003453_030 0.1635282046 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
11 Hb_002928_180 0.1660987478 - - catalase CAT1 [Manihot esculenta]
12 Hb_000608_020 0.1666719438 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
13 Hb_003430_020 0.1668940411 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
14 Hb_001814_080 0.1671261565 - - PREDICTED: oleosin 1-like [Jatropha curcas]
15 Hb_000540_040 0.1713394449 - - PREDICTED: chitinase 2 [Amborella trichopoda]
16 Hb_025432_010 0.1723891277 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
17 Hb_001148_040 0.1736060566 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
18 Hb_000056_350 0.1763584414 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
19 Hb_001976_120 0.176657471 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
20 Hb_002928_120 0.1770013353 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]

Gene co-expression network

sample Hb_001259_100 Hb_001259_100 Hb_073171_010 Hb_073171_010 Hb_001259_100--Hb_073171_010 Hb_052764_080 Hb_052764_080 Hb_001259_100--Hb_052764_080 Hb_005183_200 Hb_005183_200 Hb_001259_100--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_001259_100--Hb_000429_110 Hb_004044_030 Hb_004044_030 Hb_001259_100--Hb_004044_030 Hb_010381_110 Hb_010381_110 Hb_001259_100--Hb_010381_110 Hb_073171_010--Hb_052764_080 Hb_000152_250 Hb_000152_250 Hb_073171_010--Hb_000152_250 Hb_015473_010 Hb_015473_010 Hb_073171_010--Hb_015473_010 Hb_073171_010--Hb_005183_200 Hb_001823_070 Hb_001823_070 Hb_073171_010--Hb_001823_070 Hb_000977_090 Hb_000977_090 Hb_052764_080--Hb_000977_090 Hb_052764_080--Hb_005183_200 Hb_052764_080--Hb_000429_110 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_003430_020 Hb_003430_020 Hb_005183_200--Hb_003430_020 Hb_001515_050 Hb_001515_050 Hb_005183_200--Hb_001515_050 Hb_003439_020 Hb_003439_020 Hb_005183_200--Hb_003439_020 Hb_009581_040 Hb_009581_040 Hb_005183_200--Hb_009581_040 Hb_074312_020 Hb_074312_020 Hb_005183_200--Hb_074312_020 Hb_002928_180 Hb_002928_180 Hb_000429_110--Hb_002928_180 Hb_002928_120 Hb_002928_120 Hb_000429_110--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_000429_110--Hb_010174_190 Hb_001355_070 Hb_001355_070 Hb_000429_110--Hb_001355_070 Hb_022501_020 Hb_022501_020 Hb_004044_030--Hb_022501_020 Hb_004044_030--Hb_003430_020 Hb_000589_180 Hb_000589_180 Hb_004044_030--Hb_000589_180 Hb_004044_030--Hb_005183_200 Hb_003453_030 Hb_003453_030 Hb_004044_030--Hb_003453_030 Hb_064047_010 Hb_064047_010 Hb_010381_110--Hb_064047_010 Hb_001148_040 Hb_001148_040 Hb_010381_110--Hb_001148_040 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_004032_250 Hb_004032_250 Hb_010381_110--Hb_004032_250 Hb_003371_260 Hb_003371_260 Hb_010381_110--Hb_003371_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00815847 3.91325 0.373424 2.84518 0.0326712 0.0516376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20373 0.0582947 0.360844 2.77299 0.587989

CAGE analysis