Hb_001266_070

Information

Type -
Description -
Location Contig1266: 56822-59229
Sequence    

Annotation

kegg
ID tcc:TCM_000340
description Glycosyl hydrolase superfamily protein isoform 1
nr
ID XP_012092731.1
description PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
swissprot
ID Q9FJZ3
description Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1
trembl
ID A0A067LBI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22175 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glycosyl hydrolase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08028: 56921-59102
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_070 0.0 - - PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Jatropha curcas]
2 Hb_002498_050 0.1485592644 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
3 Hb_028707_080 0.1595765135 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
4 Hb_000281_060 0.1665884509 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_011942_060 0.1732665476 - - hypothetical protein CISIN_1g028965mg [Citrus sinensis]
6 Hb_000077_290 0.1734649266 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000230_180 0.1755213731 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
8 Hb_009851_050 0.1772831885 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
9 Hb_000720_080 0.1829587207 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
10 Hb_000004_010 0.1851518709 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
11 Hb_004306_040 0.1865186698 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
12 Hb_102591_010 0.1868504765 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
13 Hb_000890_230 0.1869287054 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
14 Hb_001675_190 0.1883654302 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
15 Hb_005170_010 0.1888650914 - - -
16 Hb_004466_060 0.1947513096 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
17 Hb_100137_010 0.1960743542 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
18 Hb_000086_410 0.1963901754 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
19 Hb_000002_480 0.197164636 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
20 Hb_010003_010 0.1991384932 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001266_070 Hb_001266_070 Hb_002498_050 Hb_002498_050 Hb_001266_070--Hb_002498_050 Hb_028707_080 Hb_028707_080 Hb_001266_070--Hb_028707_080 Hb_000281_060 Hb_000281_060 Hb_001266_070--Hb_000281_060 Hb_011942_060 Hb_011942_060 Hb_001266_070--Hb_011942_060 Hb_000077_290 Hb_000077_290 Hb_001266_070--Hb_000077_290 Hb_000230_180 Hb_000230_180 Hb_001266_070--Hb_000230_180 Hb_002498_050--Hb_000230_180 Hb_002498_050--Hb_028707_080 Hb_002192_030 Hb_002192_030 Hb_002498_050--Hb_002192_030 Hb_009851_050 Hb_009851_050 Hb_002498_050--Hb_009851_050 Hb_000091_060 Hb_000091_060 Hb_002498_050--Hb_000091_060 Hb_000890_230 Hb_000890_230 Hb_002498_050--Hb_000890_230 Hb_028707_080--Hb_009851_050 Hb_004306_040 Hb_004306_040 Hb_028707_080--Hb_004306_040 Hb_028707_080--Hb_000230_180 Hb_001546_070 Hb_001546_070 Hb_028707_080--Hb_001546_070 Hb_000664_110 Hb_000664_110 Hb_028707_080--Hb_000664_110 Hb_001474_040 Hb_001474_040 Hb_000281_060--Hb_001474_040 Hb_000281_060--Hb_002498_050 Hb_024074_020 Hb_024074_020 Hb_000281_060--Hb_024074_020 Hb_017014_010 Hb_017014_010 Hb_000281_060--Hb_017014_010 Hb_034507_040 Hb_034507_040 Hb_000281_060--Hb_034507_040 Hb_004466_060 Hb_004466_060 Hb_011942_060--Hb_004466_060 Hb_100137_010 Hb_100137_010 Hb_011942_060--Hb_100137_010 Hb_002603_050 Hb_002603_050 Hb_011942_060--Hb_002603_050 Hb_011942_060--Hb_000077_290 Hb_002477_050 Hb_002477_050 Hb_011942_060--Hb_002477_050 Hb_003052_180 Hb_003052_180 Hb_011942_060--Hb_003052_180 Hb_005170_010 Hb_005170_010 Hb_000077_290--Hb_005170_010 Hb_000077_290--Hb_000230_180 Hb_004525_040 Hb_004525_040 Hb_000077_290--Hb_004525_040 Hb_012194_060 Hb_012194_060 Hb_000077_290--Hb_012194_060 Hb_000035_330 Hb_000035_330 Hb_000077_290--Hb_000035_330 Hb_000889_100 Hb_000889_100 Hb_000077_290--Hb_000889_100 Hb_002611_020 Hb_002611_020 Hb_000230_180--Hb_002611_020 Hb_000230_180--Hb_005170_010 Hb_075764_010 Hb_075764_010 Hb_000230_180--Hb_075764_010 Hb_086639_080 Hb_086639_080 Hb_000230_180--Hb_086639_080 Hb_000696_010 Hb_000696_010 Hb_000230_180--Hb_000696_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.91128 2.13923 3.87858 28.6234 12.0374 10.7579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33557 1.76109 1.95016 3.24446 7.42395

CAGE analysis