Hb_001266_100

Information

Type -
Description -
Location Contig1266: 106273-110252
Sequence    

Annotation

kegg
ID rcu:RCOM_0535460
description hypothetical protein
nr
ID XP_012091073.1
description PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JD41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03376 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08032: 106278-110225
cDNA
(Sanger)
(ID:Location)		 006_P19.ab1: 108529-110225 , 012_C23.ab1: 108532-110225 , 014_H07.ab1: 108572-110225 , 018_K14.ab1: 108590-110225 , 025_A15.ab1: 108500-110225 , 027_H22.ab1: 108607-110225 , 028_M07.ab1: 108639-110225

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_100 0.0 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
2 Hb_000181_320 0.0438573785 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
3 Hb_003370_030 0.0608142303 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
4 Hb_001614_060 0.062173864 - - hypothetical protein JCGZ_06918 [Jatropha curcas]
5 Hb_001114_140 0.0720829702 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
6 Hb_001329_160 0.073653336 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
7 Hb_000003_190 0.0745501929 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like isoform X1 [Nelumbo nucifera]
8 Hb_001080_230 0.0749099491 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
9 Hb_008959_020 0.0771618205 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
10 Hb_000002_010 0.0786749816 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
11 Hb_003294_070 0.0798042873 - - hypothetical protein RCOM_1714550 [Ricinus communis]
12 Hb_000111_290 0.0817654424 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
13 Hb_003529_170 0.082270263 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
14 Hb_003913_070 0.0832146866 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
15 Hb_013399_070 0.0835671017 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
16 Hb_033772_030 0.0842495388 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
17 Hb_000107_490 0.0843040496 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
18 Hb_000920_300 0.0843999528 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
19 Hb_007083_030 0.0859154837 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
20 Hb_001396_200 0.0864963636 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001266_100 Hb_001266_100 Hb_000181_320 Hb_000181_320 Hb_001266_100--Hb_000181_320 Hb_003370_030 Hb_003370_030 Hb_001266_100--Hb_003370_030 Hb_001614_060 Hb_001614_060 Hb_001266_100--Hb_001614_060 Hb_001114_140 Hb_001114_140 Hb_001266_100--Hb_001114_140 Hb_001329_160 Hb_001329_160 Hb_001266_100--Hb_001329_160 Hb_000003_190 Hb_000003_190 Hb_001266_100--Hb_000003_190 Hb_003294_070 Hb_003294_070 Hb_000181_320--Hb_003294_070 Hb_000181_320--Hb_003370_030 Hb_000181_320--Hb_001329_160 Hb_000002_010 Hb_000002_010 Hb_000181_320--Hb_000002_010 Hb_000329_710 Hb_000329_710 Hb_000181_320--Hb_000329_710 Hb_007163_120 Hb_007163_120 Hb_003370_030--Hb_007163_120 Hb_003370_030--Hb_001114_140 Hb_005000_260 Hb_005000_260 Hb_003370_030--Hb_005000_260 Hb_033772_030 Hb_033772_030 Hb_003370_030--Hb_033772_030 Hb_003464_090 Hb_003464_090 Hb_003370_030--Hb_003464_090 Hb_010712_050 Hb_010712_050 Hb_001614_060--Hb_010712_050 Hb_003768_050 Hb_003768_050 Hb_001614_060--Hb_003768_050 Hb_001080_230 Hb_001080_230 Hb_001614_060--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_001614_060--Hb_003030_060 Hb_000025_280 Hb_000025_280 Hb_001614_060--Hb_000025_280 Hb_167498_010 Hb_167498_010 Hb_001114_140--Hb_167498_010 Hb_001114_140--Hb_007163_120 Hb_001369_730 Hb_001369_730 Hb_001114_140--Hb_001369_730 Hb_000107_490 Hb_000107_490 Hb_001114_140--Hb_000107_490 Hb_001838_060 Hb_001838_060 Hb_001329_160--Hb_001838_060 Hb_000976_310 Hb_000976_310 Hb_001329_160--Hb_000976_310 Hb_008959_020 Hb_008959_020 Hb_001329_160--Hb_008959_020 Hb_001329_160--Hb_001080_230 Hb_000395_130 Hb_000395_130 Hb_001329_160--Hb_000395_130 Hb_001546_080 Hb_001546_080 Hb_001329_160--Hb_001546_080 Hb_000003_190--Hb_001080_230 Hb_000092_020 Hb_000092_020 Hb_000003_190--Hb_000092_020 Hb_003470_080 Hb_003470_080 Hb_000003_190--Hb_003470_080 Hb_002872_040 Hb_002872_040 Hb_000003_190--Hb_002872_040 Hb_000003_190--Hb_000395_130 Hb_000003_190--Hb_008959_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3455 50.6241 15.7744 25.6308 27.8645 34.1216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7421 33.094 26.5153 47.5674 31.2786

CAGE analysis