Hb_001266_110

Information

Type -
Description -
Location Contig1266: 114192-114575
Sequence    

Annotation

kegg
ID rcu:RCOM_0535510
description hypothetical protein
nr
ID XP_002521554.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S6D5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0535510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 016_L21.ab1: 113972-114648

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003334_020 0.010839965 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
3 Hb_000086_710 0.033936536 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
4 Hb_006925_010 0.039548658 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
5 Hb_019392_010 0.039652465 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
6 Hb_004057_050 0.0403246332 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
7 Hb_148986_010 0.0458544133 - - unnamed protein product [Vitis vinifera]
8 Hb_080238_010 0.0501124152 - - Reticuline oxidase precursor, putative [Ricinus communis]
9 Hb_036291_010 0.0559083075 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
10 Hb_000315_110 0.0567537322 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
11 Hb_073973_050 0.0581677106 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
12 Hb_000958_180 0.0602060593 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
13 Hb_000684_060 0.0630436046 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
14 Hb_090894_010 0.0637227209 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
15 Hb_007845_020 0.0642220001 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
16 Hb_000008_010 0.0649446701 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
17 Hb_000329_160 0.0661919985 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
18 Hb_001266_090 0.0675843351 - - -
19 Hb_109163_010 0.0708316639 - - polyphenol oxidase [Hevea brasiliensis]
20 Hb_001948_020 0.0766944214 - - -

Gene co-expression network

sample Hb_001266_110 Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_001266_110--Hb_003334_020 Hb_000086_710 Hb_000086_710 Hb_001266_110--Hb_000086_710 Hb_006925_010 Hb_006925_010 Hb_001266_110--Hb_006925_010 Hb_019392_010 Hb_019392_010 Hb_001266_110--Hb_019392_010 Hb_004057_050 Hb_004057_050 Hb_001266_110--Hb_004057_050 Hb_148986_010 Hb_148986_010 Hb_001266_110--Hb_148986_010 Hb_003334_020--Hb_000086_710 Hb_003334_020--Hb_004057_050 Hb_003334_020--Hb_006925_010 Hb_080238_010 Hb_080238_010 Hb_003334_020--Hb_080238_010 Hb_003334_020--Hb_019392_010 Hb_000086_710--Hb_004057_050 Hb_000086_710--Hb_019392_010 Hb_000086_710--Hb_006925_010 Hb_000086_710--Hb_148986_010 Hb_006925_010--Hb_148986_010 Hb_006925_010--Hb_019392_010 Hb_006925_010--Hb_080238_010 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_019392_010--Hb_148986_010 Hb_000958_180 Hb_000958_180 Hb_019392_010--Hb_000958_180 Hb_004057_050--Hb_080238_010 Hb_004057_050--Hb_006925_010 Hb_004057_050--Hb_000329_160 Hb_000684_060 Hb_000684_060 Hb_148986_010--Hb_000684_060 Hb_148986_010--Hb_003334_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.149258 0.336055 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 24.0315 0

CAGE analysis