Hb_001266_140

Information

Type -
Description -
Location Contig1266: 135725-138137
Sequence    

Annotation

kegg
ID rcu:RCOM_0535570
description rer1 protein, putative
nr
ID XP_012079659.1
description PREDICTED: protein RER1B [Jatropha curcas]
swissprot
ID O48671
description Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=1 SV=2
trembl
ID A0A067KIJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14960 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein rer1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08047: 136097-137959
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_140 0.0 - - PREDICTED: protein RER1B [Jatropha curcas]
2 Hb_030827_030 0.0945851993 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
3 Hb_008556_030 0.1030371666 - - PREDICTED: uncharacterized protein LOC105648021 isoform X1 [Jatropha curcas]
4 Hb_000567_360 0.1041077032 - - hypothetical protein CISIN_1g004656mg [Citrus sinensis]
5 Hb_000797_050 0.1056701666 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
6 Hb_002681_170 0.1150401367 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
7 Hb_022693_030 0.1152338496 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
8 Hb_007044_040 0.1155122376 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
9 Hb_003126_100 0.1164100377 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
10 Hb_004951_070 0.1170737989 desease resistance Gene Name: AAA Stage III sporulation protein AA, putative [Ricinus communis]
11 Hb_002750_050 0.1174045487 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
12 Hb_152453_010 0.1195636442 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
13 Hb_000189_510 0.1204495492 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
14 Hb_002093_030 0.1222848942 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
15 Hb_000679_130 0.1228888732 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_001163_120 0.1230269871 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_001863_260 0.1233205125 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_012404_070 0.1234067105 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
19 Hb_005408_020 0.1235357151 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002249_120 0.1245225559 - - RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001266_140 Hb_001266_140 Hb_030827_030 Hb_030827_030 Hb_001266_140--Hb_030827_030 Hb_008556_030 Hb_008556_030 Hb_001266_140--Hb_008556_030 Hb_000567_360 Hb_000567_360 Hb_001266_140--Hb_000567_360 Hb_000797_050 Hb_000797_050 Hb_001266_140--Hb_000797_050 Hb_002681_170 Hb_002681_170 Hb_001266_140--Hb_002681_170 Hb_022693_030 Hb_022693_030 Hb_001266_140--Hb_022693_030 Hb_003126_100 Hb_003126_100 Hb_030827_030--Hb_003126_100 Hb_001040_040 Hb_001040_040 Hb_030827_030--Hb_001040_040 Hb_000923_040 Hb_000923_040 Hb_030827_030--Hb_000923_040 Hb_000345_530 Hb_000345_530 Hb_030827_030--Hb_000345_530 Hb_000104_080 Hb_000104_080 Hb_030827_030--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_030827_030--Hb_002587_020 Hb_002836_140 Hb_002836_140 Hb_008556_030--Hb_002836_140 Hb_001418_040 Hb_001418_040 Hb_008556_030--Hb_001418_040 Hb_008556_030--Hb_000797_050 Hb_002942_050 Hb_002942_050 Hb_008556_030--Hb_002942_050 Hb_000031_280 Hb_000031_280 Hb_008556_030--Hb_000031_280 Hb_002093_030 Hb_002093_030 Hb_008556_030--Hb_002093_030 Hb_003044_100 Hb_003044_100 Hb_000567_360--Hb_003044_100 Hb_000915_110 Hb_000915_110 Hb_000567_360--Hb_000915_110 Hb_000364_060 Hb_000364_060 Hb_000567_360--Hb_000364_060 Hb_006064_010 Hb_006064_010 Hb_000567_360--Hb_006064_010 Hb_004195_280 Hb_004195_280 Hb_000567_360--Hb_004195_280 Hb_000567_360--Hb_002587_020 Hb_001444_010 Hb_001444_010 Hb_000797_050--Hb_001444_010 Hb_000480_010 Hb_000480_010 Hb_000797_050--Hb_000480_010 Hb_000679_130 Hb_000679_130 Hb_000797_050--Hb_000679_130 Hb_135377_010 Hb_135377_010 Hb_000797_050--Hb_135377_010 Hb_001983_030 Hb_001983_030 Hb_000797_050--Hb_001983_030 Hb_002249_120 Hb_002249_120 Hb_002681_170--Hb_002249_120 Hb_002681_170--Hb_000031_280 Hb_002092_100 Hb_002092_100 Hb_002681_170--Hb_002092_100 Hb_002681_170--Hb_008556_030 Hb_002805_060 Hb_002805_060 Hb_002681_170--Hb_002805_060 Hb_000809_210 Hb_000809_210 Hb_002681_170--Hb_000809_210 Hb_022693_030--Hb_002093_030 Hb_002301_270 Hb_002301_270 Hb_022693_030--Hb_002301_270 Hb_009151_020 Hb_009151_020 Hb_022693_030--Hb_009151_020 Hb_002749_110 Hb_002749_110 Hb_022693_030--Hb_002749_110 Hb_005892_030 Hb_005892_030 Hb_022693_030--Hb_005892_030 Hb_000347_570 Hb_000347_570 Hb_022693_030--Hb_000347_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.1073 8.74224 32.3337 15.0646 43.3665 49.2171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3171 12.1859 12.2552 7.99242 19.3148

CAGE analysis