Hb_001266_160

Information

Type -
Description -
Location Contig1266: 143705-148459
Sequence    

Annotation

kegg
ID rcu:RCOM_0535590
description alpha/beta hydrolase, putative (EC:3.1.1.1)
nr
ID XP_012079660.1
description PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
swissprot
ID Q9FFZ1
description Pheophytinase, chloroplastic OS=Arabidopsis thaliana GN=PPH PE=1 SV=1
trembl
ID A0A067K5Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14962 PE=4 SV=1
Gene Ontology
ID GO:0009941
description alpha beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08054: 143763-148381 , PASA_asmbl_08055: 144771-145122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_160 0.0 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
2 Hb_000029_330 0.0732350555 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
3 Hb_000359_070 0.0914818322 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
4 Hb_004979_050 0.0964016954 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_000317_180 0.0994216373 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
6 Hb_134949_010 0.1097023169 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
7 Hb_000359_160 0.1125700161 - - PREDICTED: protein CAJ1 [Jatropha curcas]
8 Hb_000966_040 0.1129761096 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
9 Hb_000667_140 0.1145198672 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
10 Hb_000038_020 0.1147555038 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
11 Hb_002304_180 0.118225556 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
12 Hb_000069_370 0.1196752481 - - -
13 Hb_009393_140 0.1229346239 - - PREDICTED: uncharacterized protein LOC105638053 isoform X1 [Jatropha curcas]
14 Hb_000975_050 0.1249888244 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
15 Hb_006472_040 0.1260527058 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
16 Hb_000193_220 0.1262980025 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
17 Hb_002477_020 0.1297550858 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
18 Hb_002835_090 0.1299755448 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
19 Hb_004712_200 0.1315211761 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
20 Hb_000035_340 0.1322447345 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001266_160 Hb_001266_160 Hb_000029_330 Hb_000029_330 Hb_001266_160--Hb_000029_330 Hb_000359_070 Hb_000359_070 Hb_001266_160--Hb_000359_070 Hb_004979_050 Hb_004979_050 Hb_001266_160--Hb_004979_050 Hb_000317_180 Hb_000317_180 Hb_001266_160--Hb_000317_180 Hb_134949_010 Hb_134949_010 Hb_001266_160--Hb_134949_010 Hb_000359_160 Hb_000359_160 Hb_001266_160--Hb_000359_160 Hb_000029_330--Hb_000317_180 Hb_000029_330--Hb_134949_010 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_000029_330--Hb_004979_050 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000359_070--Hb_156850_020 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_000679_320 Hb_000679_320 Hb_004979_050--Hb_000679_320 Hb_004979_050--Hb_000359_160 Hb_008112_020 Hb_008112_020 Hb_004979_050--Hb_008112_020 Hb_001517_010 Hb_001517_010 Hb_004979_050--Hb_001517_010 Hb_006472_040 Hb_006472_040 Hb_004979_050--Hb_006472_040 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_009296_030 Hb_009296_030 Hb_000317_180--Hb_009296_030 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_134949_010--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_134949_010--Hb_001195_290 Hb_134949_010--Hb_000317_180 Hb_134949_010--Hb_009296_030 Hb_000359_160--Hb_000679_320 Hb_009393_140 Hb_009393_140 Hb_000359_160--Hb_009393_140 Hb_000723_320 Hb_000723_320 Hb_000359_160--Hb_000723_320 Hb_000359_160--Hb_000359_070 Hb_002814_010 Hb_002814_010 Hb_000359_160--Hb_002814_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.69799 4.19848 27.704 23.8411 2.37491 3.5695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.71422 4.05605 3.80472 4.71192 103.856

CAGE analysis