Hb_001268_050

Information

Type -
Description -
Location Contig1268: 37568-41581
Sequence    

Annotation

kegg
ID rcu:RCOM_1445980
description translocon-associated protein, beta subunit precursor, putative
nr
ID XP_002512872.1
description translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH13
description Translocon-associated protein, beta subunit, putative OS=Ricinus communis GN=RCOM_1445980 PE=4 SV=1
Gene Ontology
ID GO:0005783
description translocon-associated protein subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08088: 37383-37604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_050 0.0 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
2 Hb_003697_050 0.0769864411 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
3 Hb_003502_090 0.0780745596 - - ATP synthase subunit d, putative [Ricinus communis]
4 Hb_000083_170 0.0902027065 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
5 Hb_000479_190 0.0952454098 - - conserved hypothetical protein [Ricinus communis]
6 Hb_021443_100 0.0955865579 - - -
7 Hb_000326_090 0.0973747711 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
8 Hb_037887_010 0.0992746164 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
9 Hb_001250_060 0.0999834505 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
10 Hb_066768_010 0.1004235453 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_003108_020 0.1008312064 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
12 Hb_001390_130 0.1024790212 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
13 Hb_005867_020 0.1030951404 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
14 Hb_006429_010 0.1032846401 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
15 Hb_086085_020 0.1043878527 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
16 Hb_094836_010 0.1050368159 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
17 Hb_002284_230 0.105076122 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
18 Hb_003352_040 0.1069637815 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
19 Hb_021238_050 0.1092119999 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001584_190 0.111359551 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_001268_050 Hb_001268_050 Hb_003697_050 Hb_003697_050 Hb_001268_050--Hb_003697_050 Hb_003502_090 Hb_003502_090 Hb_001268_050--Hb_003502_090 Hb_000083_170 Hb_000083_170 Hb_001268_050--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_001268_050--Hb_000479_190 Hb_021443_100 Hb_021443_100 Hb_001268_050--Hb_021443_100 Hb_000326_090 Hb_000326_090 Hb_001268_050--Hb_000326_090 Hb_002284_230 Hb_002284_230 Hb_003697_050--Hb_002284_230 Hb_002735_050 Hb_002735_050 Hb_003697_050--Hb_002735_050 Hb_025098_010 Hb_025098_010 Hb_003697_050--Hb_025098_010 Hb_001390_130 Hb_001390_130 Hb_003697_050--Hb_001390_130 Hb_094836_010 Hb_094836_010 Hb_003697_050--Hb_094836_010 Hb_003108_020 Hb_003108_020 Hb_003502_090--Hb_003108_020 Hb_003502_090--Hb_000479_190 Hb_001234_100 Hb_001234_100 Hb_003502_090--Hb_001234_100 Hb_003605_090 Hb_003605_090 Hb_003502_090--Hb_003605_090 Hb_154948_040 Hb_154948_040 Hb_003502_090--Hb_154948_040 Hb_037887_010 Hb_037887_010 Hb_000083_170--Hb_037887_010 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000162_260 Hb_000162_260 Hb_000083_170--Hb_000162_260 Hb_000083_170--Hb_000326_090 Hb_012653_040 Hb_012653_040 Hb_000083_170--Hb_012653_040 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_001584_190 Hb_001584_190 Hb_000479_190--Hb_001584_190 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360 Hb_003697_030 Hb_003697_030 Hb_021443_100--Hb_003697_030 Hb_023001_060 Hb_023001_060 Hb_021443_100--Hb_023001_060 Hb_004920_120 Hb_004920_120 Hb_021443_100--Hb_004920_120 Hb_000056_260 Hb_000056_260 Hb_021443_100--Hb_000056_260 Hb_003470_090 Hb_003470_090 Hb_021443_100--Hb_003470_090 Hb_002296_040 Hb_002296_040 Hb_000326_090--Hb_002296_040 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5469 14.6645 23.2278 81.415 29.6943 68.441
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6386 71.0181 64.411 45.7865 29.2006

CAGE analysis