Hb_001268_070

Information

Type -
Description -
Location Contig1268: 61597-63513
Sequence    

Annotation

kegg
ID rcu:RCOM_1446020
description hypothetical protein
nr
ID XP_002512876.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9RH17
description CASP-like protein 1F2 OS=Ricinus communis GN=RCOM_1446020 PE=2 SV=1
trembl
ID A0A061EE21
description CASP-like protein OS=Theobroma cacao GN=TCM_017295 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein rcom_1446020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012553_010 0.0566170834 - - hypothetical protein JCGZ_10552 [Jatropha curcas]
3 Hb_124207_010 0.1140319851 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_166257_010 0.1142226447 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
5 Hb_002648_020 0.1179266982 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
6 Hb_000070_140 0.1226614575 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
7 Hb_009297_010 0.1297435292 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_006452_140 0.1319447181 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
9 Hb_012268_010 0.1375899899 - - glutamic acid-rich protein [Manihot esculenta]
10 Hb_000510_350 0.1480367822 - - Putative polyprotein [Oryza sativa Japonica Group]
11 Hb_000291_020 0.1485324152 - - hypothetical protein POPTR_0019s06080g [Populus trichocarpa]
12 Hb_123238_010 0.149180478 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
13 Hb_003344_020 0.1493837812 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
14 Hb_007259_030 0.1494043696 - - -
15 Hb_185340_020 0.1494352835 - - -
16 Hb_001659_030 0.1495461975 - - -
17 Hb_001486_130 0.1499421144 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
18 Hb_080293_010 0.1501705665 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
19 Hb_005588_020 0.1502052169 - - PREDICTED: patatin-like protein 2 [Vitis vinifera]
20 Hb_008248_010 0.150493286 - - -

Gene co-expression network

sample Hb_001268_070 Hb_001268_070 Hb_012553_010 Hb_012553_010 Hb_001268_070--Hb_012553_010 Hb_124207_010 Hb_124207_010 Hb_001268_070--Hb_124207_010 Hb_166257_010 Hb_166257_010 Hb_001268_070--Hb_166257_010 Hb_002648_020 Hb_002648_020 Hb_001268_070--Hb_002648_020 Hb_000070_140 Hb_000070_140 Hb_001268_070--Hb_000070_140 Hb_009297_010 Hb_009297_010 Hb_001268_070--Hb_009297_010 Hb_012553_010--Hb_124207_010 Hb_012553_010--Hb_166257_010 Hb_000291_020 Hb_000291_020 Hb_012553_010--Hb_000291_020 Hb_012553_010--Hb_000070_140 Hb_002787_100 Hb_002787_100 Hb_012553_010--Hb_002787_100 Hb_124207_010--Hb_000291_020 Hb_124207_010--Hb_002787_100 Hb_124207_010--Hb_166257_010 Hb_000523_060 Hb_000523_060 Hb_124207_010--Hb_000523_060 Hb_166257_010--Hb_009297_010 Hb_000101_060 Hb_000101_060 Hb_166257_010--Hb_000101_060 Hb_166257_010--Hb_000291_020 Hb_006124_040 Hb_006124_040 Hb_002648_020--Hb_006124_040 Hb_006452_140 Hb_006452_140 Hb_002648_020--Hb_006452_140 Hb_006353_010 Hb_006353_010 Hb_002648_020--Hb_006353_010 Hb_001403_070 Hb_001403_070 Hb_002648_020--Hb_001403_070 Hb_003683_090 Hb_003683_090 Hb_002648_020--Hb_003683_090 Hb_002294_010 Hb_002294_010 Hb_000070_140--Hb_002294_010 Hb_003636_010 Hb_003636_010 Hb_000070_140--Hb_003636_010 Hb_012268_010 Hb_012268_010 Hb_000070_140--Hb_012268_010 Hb_118777_010 Hb_118777_010 Hb_000070_140--Hb_118777_010 Hb_005588_020 Hb_005588_020 Hb_000070_140--Hb_005588_020 Hb_008062_020 Hb_008062_020 Hb_009297_010--Hb_008062_020 Hb_049562_010 Hb_049562_010 Hb_009297_010--Hb_049562_010 Hb_000238_010 Hb_000238_010 Hb_009297_010--Hb_000238_010 Hb_002154_090 Hb_002154_090 Hb_009297_010--Hb_002154_090 Hb_154646_010 Hb_154646_010 Hb_009297_010--Hb_154646_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.94927 0.399739 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.85885 0

CAGE analysis