Hb_001268_080

Information

Type -
Description -
Location Contig1268: 76958-88938
Sequence    

Annotation

kegg
ID rcu:RCOM_1446130
description catalytic, putative
nr
ID XP_002512877.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9LW26
description Acyltransferase-like protein At3g26840, chloroplastic OS=Arabidopsis thaliana GN=At3g26840 PE=2 SV=1
trembl
ID B9RH18
description Catalytic, putative OS=Ricinus communis GN=RCOM_1446130 PE=4 SV=1
Gene Ontology
ID GO:0016747
description acyltransferase-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08091: 76926-77262 , PASA_asmbl_08092: 79911-84250 , PASA_asmbl_08093: 79934-84260 , PASA_asmbl_08094: 79911-80199 , PASA_asmbl_08095: 84274-87107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_080 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_000367_280 0.0570501255 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
3 Hb_001213_120 0.0748563289 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
4 Hb_078633_010 0.0791709453 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_011245_020 0.0802423037 - - Ferrochelatase [Medicago truncatula]
6 Hb_006831_030 0.0803017899 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
7 Hb_004297_040 0.10489739 - - acyl CoA reductase [Hevea brasiliensis]
8 Hb_000742_270 0.1062201038 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
9 Hb_001935_030 0.1098612021 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001102_250 0.1101752369 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
11 Hb_008066_040 0.1106485715 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
12 Hb_072912_020 0.1108957412 - - abhydrolase domain containing, putative [Ricinus communis]
13 Hb_007810_030 0.110944419 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
14 Hb_024714_060 0.1126522171 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
15 Hb_000032_040 0.1134069912 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
16 Hb_003043_120 0.1145803091 - - conserved hypothetical protein [Ricinus communis]
17 Hb_148121_010 0.1181019649 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001006_180 0.1207203162 - - PREDICTED: endonuclease V-like [Jatropha curcas]
19 Hb_000398_160 0.1217551643 - - GDP-mannose transporter, putative [Ricinus communis]
20 Hb_001507_070 0.1234589166 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001268_080 Hb_001268_080 Hb_000367_280 Hb_000367_280 Hb_001268_080--Hb_000367_280 Hb_001213_120 Hb_001213_120 Hb_001268_080--Hb_001213_120 Hb_078633_010 Hb_078633_010 Hb_001268_080--Hb_078633_010 Hb_011245_020 Hb_011245_020 Hb_001268_080--Hb_011245_020 Hb_006831_030 Hb_006831_030 Hb_001268_080--Hb_006831_030 Hb_004297_040 Hb_004297_040 Hb_001268_080--Hb_004297_040 Hb_000367_280--Hb_001213_120 Hb_000367_280--Hb_011245_020 Hb_007810_030 Hb_007810_030 Hb_000367_280--Hb_007810_030 Hb_000367_280--Hb_004297_040 Hb_000367_280--Hb_078633_010 Hb_001213_120--Hb_078633_010 Hb_001213_120--Hb_004297_040 Hb_015934_020 Hb_015934_020 Hb_001213_120--Hb_015934_020 Hb_001213_120--Hb_007810_030 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_005137_020 Hb_005137_020 Hb_078633_010--Hb_005137_020 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_003043_120 Hb_003043_120 Hb_011245_020--Hb_003043_120 Hb_011245_020--Hb_006831_030 Hb_011245_020--Hb_007810_030 Hb_017862_010 Hb_017862_010 Hb_011245_020--Hb_017862_010 Hb_000069_100 Hb_000069_100 Hb_006831_030--Hb_000069_100 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_004297_040--Hb_078633_010 Hb_004297_040--Hb_005137_020 Hb_001102_250 Hb_001102_250 Hb_004297_040--Hb_001102_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7263 0.775133 1.42019 5.02773 7.09655 10.1779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.0725 47.76 42.3573 4.01374 1.75529

CAGE analysis