Hb_001268_100

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1268: 91723-92178
Sequence    

Annotation

kegg
ID rcu:RCOM_1446140
description hypothetical protein
nr
ID XP_012067562.1
description PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
swissprot
ID Q9FFX4
description Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1
trembl
ID A0A067L3N4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_100 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
2 Hb_107500_010 0.1137710846 - - -
3 Hb_134310_030 0.2885102941 - - hypothetical protein JCGZ_10790 [Jatropha curcas]
4 Hb_122873_010 0.2899500539 - - -
5 Hb_004724_350 0.2902203871 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002257_020 0.3041921433 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_000853_380 0.3086156651 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009449_010 0.3095306642 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
9 Hb_116293_020 0.3155505159 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
10 Hb_005520_020 0.3157715694 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
11 Hb_016859_010 0.3170201204 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_002016_160 0.3186282002 - - -
13 Hb_005048_060 0.3200963453 - - conserved hypothetical protein [Ricinus communis]
14 Hb_049415_010 0.3240880859 - - -
15 Hb_187136_010 0.3315779855 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
16 Hb_004088_060 0.3315942132 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
17 Hb_000457_040 0.3372576694 - - -
18 Hb_038098_010 0.3470702961 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
19 Hb_114435_010 0.3481349168 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_098988_010 0.3513254138 - - hypothetical protein JCGZ_18539 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_100 Hb_001268_100 Hb_107500_010 Hb_107500_010 Hb_001268_100--Hb_107500_010 Hb_134310_030 Hb_134310_030 Hb_001268_100--Hb_134310_030 Hb_122873_010 Hb_122873_010 Hb_001268_100--Hb_122873_010 Hb_004724_350 Hb_004724_350 Hb_001268_100--Hb_004724_350 Hb_002257_020 Hb_002257_020 Hb_001268_100--Hb_002257_020 Hb_000853_380 Hb_000853_380 Hb_001268_100--Hb_000853_380 Hb_107500_010--Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_107500_010--Hb_000457_040 Hb_107500_010--Hb_004724_350 Hb_107500_010--Hb_134310_030 Hb_002016_160 Hb_002016_160 Hb_107500_010--Hb_002016_160 Hb_000482_060 Hb_000482_060 Hb_134310_030--Hb_000482_060 Hb_027428_030 Hb_027428_030 Hb_134310_030--Hb_027428_030 Hb_000173_480 Hb_000173_480 Hb_134310_030--Hb_000173_480 Hb_000627_100 Hb_000627_100 Hb_134310_030--Hb_000627_100 Hb_038098_010 Hb_038098_010 Hb_122873_010--Hb_038098_010 Hb_114435_010 Hb_114435_010 Hb_122873_010--Hb_114435_010 Hb_122873_010--Hb_002257_020 Hb_049415_010 Hb_049415_010 Hb_122873_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_122873_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_122873_010--Hb_116293_020 Hb_012725_010 Hb_012725_010 Hb_004724_350--Hb_012725_010 Hb_004724_350--Hb_122873_010 Hb_004724_350--Hb_038098_010 Hb_004724_350--Hb_049415_010 Hb_002608_020 Hb_002608_020 Hb_002257_020--Hb_002608_020 Hb_002257_020--Hb_114435_010 Hb_000122_240 Hb_000122_240 Hb_002257_020--Hb_000122_240 Hb_002257_020--Hb_038098_010 Hb_001437_020 Hb_001437_020 Hb_002257_020--Hb_001437_020 Hb_000853_380--Hb_000457_040 Hb_001798_040 Hb_001798_040 Hb_000853_380--Hb_001798_040 Hb_000853_380--Hb_004724_350 Hb_005524_010 Hb_005524_010 Hb_000853_380--Hb_005524_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0666582 0.382077 0 0 0.0627633 0.0601515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.492775 0 0 0

CAGE analysis